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[191665_s_at]

Description ZK675.3 /REP_DB=WormBase Gene ID /WP=CE01722 /TR=SW:Q09379 /GB=CAA86845.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster 6grp_highest_10_10 > 32      6grp_high1_10_10 > 13      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 50      6grp_total > 24      4grp_total > 11      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 615
1 2 3 4 range
A 641.6
(-1.6)
P 		640.5
(-1.6)
P 		507.3
(-3)
P 		1087.3
(3)
P 		580
B 641.3
(-1.3)
P 		703
(-0.7)
P 		472.6
(-3)
P 		1064.6
(3)
P 		592
C 639.4
(-2.1)
P 		612.7
(-2.4)
P 		569.6
(-3)
P 		1035.8
(3)
P 		466
avr 640.8
(-1.6) 		652.1
(-1.5) 		516.5
(-3) 		1062.6
(3) 		546

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 591
1 2 3 4 5 6 range
A 757.4
(3)
P 		669.7
(2)
P 		730.4
(2.7)
P 		391.5
(-1.1)
P 		225.2
(-3)
P 		242.6
(-2.8)
P 		532
B 627.5
(0.9)
P 		813.3
(3)
P 		463.6
(-0.9)
P 		448.1
(-1.1)
P 		279.4
(-3)
P 		320.4
(-2.5)
P 		534
C 626.9
(1)
P 		815.8
(3)
P 		487.1
(-0.5)
P 		382.8
(-1.6)
P 		249.4
(-3)
P 		371.9
(-1.7)
P 		566
avr 670.6
(1.9) 		766.3
(3) 		560.4
(0.6) 		407.5
(-1.2) 		251.3
(-3) 		311.6
(-2.3) 		515
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 233.6
(3)
P 		139
(-2.6)
P 		132.6
(-3)
P 		159.2
(-1.4)
P 		101
B 204.5
(1.9)
P 		173.6
(0.3)
P 		109.5
(-3)
P 		226.9
(3)
P 		117
C 211.7
(3)
P 		176.1
(-2.8)
P 		198.5
(0.9)
P 		174.7
(-3)
P 		37
avr 216.6
(3) 		162.9
(-1.6) 		146.9
(-3) 		186.9
(0.4) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 139.6
(-0.3)
P 		238.2
(3)
P 		159.1
(0.4)
P 		99.3
(-1.7)
P 		68
(-2.7)
P 		59.1
(-3)
P 		179
B 218.4
(1)
P 		270.7
(3)
P 		112.6
(-3)
P 		118.7
(-2.8)
P 		113.5
(-3)
P 		119.5
(-2.7)
P 		158
C 232.3
(2.4)
P 		248.9
(3)
P 		124
(-1.4)
P 		77
(-3)
P 		80.7
(-2.9)
P 		124.5
(-1.3)
P 		172
avr 196.8
(1) 		252.6
(3) 		131.9
(-1.4) 		98.3
(-2.6) 		87.4
(-3) 		101
(-2.5) 		165
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191665_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5117
Sequence Type Exemplar sequence
Representative Public ID ZK675.3 NCBI
Target Description ZK675.3 /REP_DB=WormBase Gene ID /WP=CE01722 /TR=SW:Q09379 /GB=CAA86845.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=Putative membrane protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000025897 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7904687:7907508:-1 11/11 None
ZK675.3 ENSEMBL cdna:pseudogene chromosome:CEL140:II:7904687:7907508:-1 gene:ZK675.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025890 4/11 Cross Hyb Matching Probes None
SNAP00000025891 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7904683-7907505(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK675.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast Q09379 Very hypothetical protein ZK675.3 in chromosome II 0.0
blast CAE59819 Hypothetical protein CBG03286 [Caenorhabditis briggsae] 0.0
blast XP_689098 PREDICTED: similar to bestrophin [Danio rerio] 1.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR000615 EMBL-EBI Bestrophin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000025897 3 20-42,227-249,264-281
Sequence
Target Sequence 
>C. ELEGANS:191665_S_AT
aaatgaacttcgtgtccttctggatgcattggaaaagtatcgaaatggcttttttcagtt
gttcatttacgattggattgcaattcctcttgtgtatacgcaggtttctacaatctcagt
ctacggatattttctgtttgcactcataggaagacagtacccaagcaaaaatgaaaatga
agaaatagttgatgtatatgttccaattttcacaattctacaatttttattctatgtcgg
atggttaaaggtcggagaggatctgatgttcccgtttggggctgatgatgaggatttcga
gtttaactacatactggaacgaaatttggaagtttcaatgttaatagtcgatgaactaca
caatcaagtaccacctgtttatgttgaaagtttggatgatgaaattcgtttacttcatac
aagtgcatcgtcaaaactatcaaatcatccacaacgacagcatcttcggaaattaaaatt
caatgtagacgcaatgcaagtgcaagcagttccgggaaatcatctaaacgaacgagacgt
ttccgtttcaacaacttcaaaactttcattcgctgatctgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGAACTTCGTGTCCTTCTGGAT 648 119 609 Antisense
GTTGTTCATTTACGATTGGATTGCA 561 437 666 Antisense
GGATTGCAATTCCTCTTGTGTATAC 330 509 683 Antisense
GCAGGTTTCTACAATCTCAGTCTAC 423 311 708 Antisense
GTCTACGGATATTTTCTGTTTGCAC 332 469 727 Antisense
GGTCGGAGAGGATCTGATGTTCCCG 655 501 858 Antisense
TCTGATGTTCCCGTTTGGGGCTGAT 262 609 870 Antisense
CAATCAAGTACCACCTGTTTATGTT 13 177 969 Antisense
AAATCATCCACAACGACAGCATCTT 586 117 1050 Antisense
AATGCAAGTGCAAGCAGTTCCGGGA 505 165 1101 Antisense
CAAAACTTTCATTCGCTGATCTGGA 27 191 1166 Antisense
Sequence Source Affymetrix Proprietary Database