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[191664_s_at] protein-tyrosine phosphatase

Description K07F5.6 /REP_DB=WormBase Gene ID /WP=CE06121 /TR=Q21291 /GB=CAA94276.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 96      4grp_total > 25      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 5.3
(-3)
A 		38.7
(3)
A 		37.7
(2.8)
A 		29.9
(1.4)
A 		33
B 19
(-2.9)
A 		60.9
(3)
A 		48.1
(1.2)
A 		18.3
(-3)
A 		43
C 6.6
(-2.8)
A 		7.4
(-2.7)
A 		2.6
(-3)
A 		101.9
(3)
P 		99
avr 10.3
(-3) 		35.7
(0.8) 		29.5
(-0.1) 		50
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 71
1 2 3 4 5 6 range
A 9.8
(-2.4)
A 		5.8
(-2.8)
A 		3
(-3)
A 		32.2
(-0.5)
A 		45.5
(0.6)
A 		73.9
(3)
P 		71
B 4
(-3)
A 		8.7
(-2.5)
A 		4
(-3)
A 		41.8
(0.7)
A 		41.1
(0.7)
A 		64.6
(3)
A 		61
C 8.2
(-2.8)
A 		6.9
(-3)
A 		10.1
(-2.6)
A 		7.6
(-2.9)
A 		52.4
(2.7)
M 		55.1
(3)
P 		48
avr 7.3
(-2.8) 		7.1
(-2.9) 		5.7
(-3) 		27.2
(-0.8) 		46.3
(1.1) 		64.5
(3) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 1.9
(-3)
A 		8.4
(1.9)
A 		9.8
(3)
A 		4.4
(-1.1)
A 		8
B 6
(-1.9)
A 		15
(3)
A 		11.1
(0.9)
A 		3.9
(-3)
A 		11
C 2.2
(-2.5)
A 		2.1
(-2.6)
A 		0.9
(-3)
A 		17.2
(3)
P 		16
avr 3.4
(-3) 		8.5
(3) 		7.3
(1.6) 		8.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.8
(-2.6)
A 		2.1
(-2.5)
A 		0.7
(-3)
A 		8.2
(-0.4)
A 		13.7
(1.5)
A 		18
(3)
P 		17
B 1.4
(-2.9)
A 		2.9
(-2.5)
A 		1
(-3)
A 		11.1
(-0.4)
A 		16.7
(1.1)
A 		24.1
(3)
A 		23
C 3
(-2.5)
A 		2.1
(-2.8)
A 		2.6
(-2.6)
A 		1.5
(-3)
A 		16.9
(2.4)
M 		18.5
(3)
P 		17
avr 2.1
(-2.8) 		2.4
(-2.7) 		1.4
(-3) 		6.9
(-1.2) 		15.8
(1.6) 		20.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191664_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8912
Sequence Type Exemplar sequence
Representative Public ID K07F5.6 NCBI
Target Description K07F5.6 /REP_DB=WormBase Gene ID /WP=CE06121 /TR=Q21291 /GB=CAA94276.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069363 NCBI Caenorhabditis elegans K07F5.6 (K07F5.6) mRNA, complete cds. 11/11 None
SNAP00000004249 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9845002:9846614:-1 11/11 None
GENEFINDER00000004264 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9845002:9846654:-1 11/11 None
K07F5.6 ENSEMBL cdna:known chromosome:CEL140:IV:9844968:9846620:-1 gene:K07F5.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9845007-9846660(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl K07F5.6
Entrez Gene 177832 Entrez gene
WormBase CE35586 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94276 Hypothetical protein K07F5.6 [Caenorhabditis elegans] ref|NP_501764.2| K07F5.6 [Caenorhabditis elegans] 0.0
blast CAA95832 Hypothetical protein M05B5.1 [Caenorhabditis elegans] ref|NP_492030.1| M05B5.1 [Caenorhabditis elegans] 1.0E-145
blast CAE56064 Hypothetical protein CBG23640 [Caenorhabditis briggsae] emb|CAE56935.1| Hypothetical protein CBG24780 [Caenorhabditis briggsae] 1.0E-135
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.8E-56
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 5.8E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501764.2 1 417-434
K07F5.6 1 417-434
SNAP00000004249 1 417-434
GENEFINDER00000004264 1 449-466
Sequence
Target Sequence 
>C. ELEGANS:191664_S_AT
tgtgcatcgatcatcgttctttccccttgaaactgatcattacatgaacctaaagggctg
gctcatcaacactcgaagagtgacagttgatcatcgaaacaagggctggatgaataagta
tacagtggaagtggtggcagaaggatgcagtgaagccacatttgcaaaagtctacaattg
cactacgtggccttggaagaagtatccggatgatgagaagaaagttcttgctcttgtacg
agcaccatataaagacacctcgacttctcttattgctaatctggagaaacttgcaccaat
tgttgtgatgtgtgatttgggtctcgatcgttcagcaacagtagttctgacttctatcat
tatcgatcaaatcattgcgggaaaaacgccagattgtgatgctctattcaagaagatgag
ggatcaacgtgccggtgtgttcactatgagcattttctacacttatgcgatccgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCATCGATCATCGTTCTTTCCC 135 557 924 Antisense
GTTCTTTCCCCTTGAAACTGATCAT 682 443 939 Antisense
CTAAAGGGCTGGCTCATCAACACTC 346 225 973 Antisense
TACAATTGCACTACGTGGCCTTGGA 16 643 1096 Antisense
GTTCTTGCTCTTGTACGAGCACCAT 73 445 1147 Antisense
CTCGACTTCTCTTATTGCTAATCTG 368 233 1182 Antisense
GGTCTCGATCGTTCAGCAACAGTAG 170 503 1243 Antisense
GCAACAGTAGTTCTGACTTCTATCA 101 319 1258 Antisense
AACGCCAGATTGTGATGCTCTATTC 126 147 1308 Antisense
TCAACGTGCCGGTGTGTTCACTATG 476 629 1347 Antisense
ATTTTCTACACTTATGCGATCCGCG 120 15 1375 Antisense
Sequence Source Affymetrix Proprietary Database