[Home] | [Total List]

[191663_at]

Description F13B10.2 /REP_DB=WormBase Gene ID /WP=CE05598 /TR=SW:P50880 /GB=CAA90183.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=60S ribosomal protein L3
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 30      4grp_highest_8_8 > 06      4grp_high_8_8 > 22      6grp_highest_nonorm > 09      6grp_total > 42      4grp_total > 17      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20218
1 2 3 4 range
A 29485.1
(-3)
P 		41848.2
(0.7)
P 		39212
(-0.1)
P 		49476.1
(3)
P 		19991
B 33543.6
(-3)
P 		35198.4
(-1.6)
P 		37924.2
(0.6)
P 		40764.1
(3)
P 		7221
C 30000.2
(-2.7)
P 		32389.3
(-1.9)
P 		29257.9
(-3)
P 		46773.8
(3)
P 		17516
avr 31009.6
(-3) 		36478.6
(-0.8) 		35464.7
(-1.2) 		45671.3
(3) 		14662

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13763
1 2 3 4 5 6 range
A 34320.5
(3)
P 		26840.4
(-0.9)
P 		30259
(0.9)
P 		26498
(-1.1)
P 		22759.5
(-3)
P 		27032.6
(-0.8)
P 		11561
B 26039.9
(0.2)
P 		26124.4
(0.2)
P 		30934.5
(3)
P 		24926
(-0.5)
P 		20703.9
(-2.9)
P 		20557.7
(-3)
P 		10377
C 24211.2
(-1.6)
P 		27344.3
(1.2)
P 		29246.2
(3)
P 		27531.6
(1.4)
P 		25145.1
(-0.8)
P 		22749
(-3)
P 		6497
avr 28190.5
(1.4) 		26769.7
(0.2) 		30146.6
(3) 		26318.5
(-0.2) 		22869.5
(-3) 		23446.4
(-2.5) 		7277
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3493
1 2 3 4 range
A 10735.5
(3)
P 		9084.1
(0.2)
P 		10250.8
(2.2)
P 		7242.3
(-3)
P 		3493
B 10696.8
(3)
P 		8693.2
(-3)
P 		8787.9
(-2.7)
P 		8686.8
(-3)
P 		2010
C 9930.9
(2.3)
P 		9312.1
(0.7)
P 		10197.3
(3)
P 		7886.8
(-3)
P 		2311
avr 10454.4
(3) 		9029.8
(-0.4) 		9745.3
(1.3) 		7938.6
(-3) 		2516

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4009
1 2 3 4 5 6 range
A 6326.7
(-3)
P 		9545.8
(3)
P 		6589.8
(-2.5)
P 		6720.5
(-2.3)
P 		6867.8
(-2)
P 		6581.6
(-2.5)
P 		3219
B 9060.6
(3)
P 		8695.7
(2.1)
P 		7511.8
(-0.8)
P 		6602
(-3)
P 		8411.7
(1.4)
P 		7665.9
(-0.4)
P 		2459
C 8974
(3)
P 		8343.6
(1.9)
P 		7443.7
(0.3)
P 		5536.6
(-3)
P 		8136.6
(1.5)
P 		7615.4
(0.6)
P 		3437
avr 8120.4
(1.3) 		8861.7
(3) 		7181.8
(-0.9) 		6286.4
(-3) 		7805.4
(0.5) 		7287.6
(-0.7) 		2575
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191663_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6637
Sequence Type Exemplar sequence
Representative Public ID F13B10.2 NCBI
Target Description F13B10.2 /REP_DB=WormBase Gene ID /WP=CE05598 /TR=SW:P50880 /GB=CAA90183.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=60S ribosomal protein L3
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026085(11), NM_001026083(11), NM_001026084(10), NR_002368(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026085 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-3) (rpl-3) mRNA, complete cds. 11/11 None
NM_001026083 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-3) (rpl-3) mRNA, complete cds. 11/11 None
NM_001026084 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-3) (rpl-3) mRNA, complete cds. 10/11 None
NR_002368 NCBI Caenorhabditis elegans rpl-3, miscRNA. 11/11 None
SNAP00000027268 ENSEMBL cdna:SNAP chromosome:CEL140:III:3868632:3869444:1 11/11 None
GENEFINDER00000027275 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3868749:3869444:1 10/11 None
F13B10.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:3867824:3869444:1 gene:F13B10.2 11/11 None
F13B10.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:3867828:3869477:1 gene:F13B10.2 11/11 None
F13B10.2d.1 ENSEMBL cdna:known chromosome:CEL140:III:3867828:3869502:1 gene:F13B10.2 11/11 None
F13B10.2d.2 ENSEMBL cdna:known chromosome:CEL140:III:3867828:3869480:1 gene:F13B10.2 11/11 None
F13B10.2c ENSEMBL cdna:known chromosome:CEL140:III:3867839:3869461:1 gene:F13B10.2 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3867838-3869444(+) 100.0 100.0
Public Domain and Genome References
Ensembl F13B10.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91277 Hypothetical protein F13B10.2a [Caenorhabditis elegans] emb|CAA90183.1| Hypothetical protein F13B10.2a [Caenorhabditis elegans] emb|CAA93269.1| ribosomal protein L3 [Caenorhabditis elegans] emb|CAA93268.1| ribosomal protein L3 [Caenorhabditis elegans] ref|NP_001021254.1| Ribosomal Protein, Large subunit family member (rpl-3) [Caenorhabditis elegans] sp|P50880|RL3_CAEEL 60S ribosomal protein L3 0.0
blast Q9NBK4 60S ribosomal protein L3 emb|CAE60088.1| Hypothetical protein CBG03612 [Caenorhabditis briggsae] 0.0
blast CAH04729 Hypothetical protein F13B10.2c [Caenorhabditis elegans] emb|CAH10799.1| Hypothetical protein F13B10.2c [Caenorhabditis elegans] ref|NP_001021255.1| Ribosomal Protein, Large subunit family member (rpl-3) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 4.1E-92
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 2.2E-70
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 1.1E-120
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 1.0E-126
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 7.7E-71
Pfam IPR000597 EMBL-EBI Ribosomal protein L3 2.2E-70
Sequence
Target Sequence 
>C. ELEGANS:191663_AT
aagtccaggttgataccgtcttcgctcaggatgagatgattgacaccatcggagttacca
gaggtcacggattcaagggagtcaccagcagatggcacaccaagaagcttcctcgcaaga
cgcacaagggtctccgcaaggtcgcctgtattggagcttggcatccatctcgtgtcgcct
tcactgtcgctcgtgctggacaaaagggattccatcaccgtaccatcatcaacaacaaga
tctaccgtattggaaagtctgctctcactgaggaaggaaagaacaacggatccaccgagt
tcgatcttacccagaagaccatcaccccaatgggaggattcccaagatacggtatcgtca
accaggactacatcatgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTCCAGGTTGATACCGTCTTCGC 245 159 623 Antisense
GATTGACACCATCGGAGTTACCAGA 439 433 660 Antisense
AGGGAGTCACCAGCAGATGGCACAC 75 59 698 Antisense
AGATGGCACACCAAGAAGCTTCCTC 444 67 712 Antisense
TCGCAAGACGCACAAGGGTCTCCGC 616 599 735 Antisense
TCCGCAAGGTCGCCTGTATTGGAGC 665 585 755 Antisense
GTATTGGAGCTTGGCATCCATCTCG 73 453 770 Antisense
CAAAAGGGATTCCATCACCGTACCA 103 189 823 Antisense
ACCGTATTGGAAAGTCTGCTCTCAC 317 89 866 Antisense
AACGGATCCACCGAGTTCGATCTTA 538 143 907 Antisense
GTCAACCAGGACTACATCATGCTTC 56 465 979 Antisense
Sequence Source Affymetrix Proprietary Database