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[191660_at] 7TM chemoreceptor, srh family

Description C18B10.8 /REP_DB=WormBase Gene ID /WP=CE23556 /GEN=srh-125 /TR=P91069 /GB=AAK18892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 37      4grp_total > 12      6grp_cgc > 16      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 57.2
(0)
A 		4.7
(-3)
A 		5.1
(-3)
A 		108.2
(3)
P 		104
B 44.8
(-0.8)
A 		46.1
(-0.7)
A 		26.6
(-3)
A 		77.1
(3)
A 		51
C 11.1
(-2.6)
A 		35.4
(-0.7)
A 		5.4
(-3)
A 		83.8
(3)
P 		78
avr 37.7
(-1) 		28.7
(-1.7) 		12.4
(-3) 		89.7
(3) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 36.9
(3)
A 		14.4
(-1.2)
A 		5.3
(-2.9)
A 		7.9
(-2.4)
A 		4.8
(-3)
A 		4.7
(-3)
A 		32
B 60.7
(3)
A 		10.6
(-2.4)
A 		5.1
(-3)
A 		10.2
(-2.4)
A 		13.3
(-2.1)
A 		44
(1.2)
M 		56
C 30
(0.7)
A 		46.3
(3)
A 		8.2
(-2.4)
A 		40.4
(2.2)
A 		4.2
(-3)
A 		33
(1.1)
A 		42
avr 42.5
(3) 		23.8
(-0.1) 		6.2
(-3) 		19.5
(-0.8) 		7.4
(-2.8) 		27.2
(0.5) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.8
(3)
A 		1
(-3)
A 		1.3
(-2.9)
A 		15.8
(1.5)
P 		20
B 14.3
(1.8)
A 		11.4
(0.1)
A 		6.2
(-3)
A 		16.4
(3)
A 		10
C 3.7
(-2.1)
A 		10.2
(1.1)
A 		1.9
(-3)
A 		14.1
(3)
P 		12
avr 12.9
(1.8) 		7.5
(-0.9) 		3.1
(-3) 		15.4
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 6.8
(3)
A 		5.1
(1.2)
A 		1.2
(-3)
A 		2
(-2.1)
A 		1.5
(-2.7)
A 		1.2
(-3)
A 		6
B 21.1
(3)
A 		3.5
(-2.3)
A 		1.2
(-3)
A 		2.7
(-2.5)
A 		5.4
(-1.7)
A 		16.4
(1.6)
M 		20
C 11.1
(1.6)
A 		14.1
(3)
A 		2.1
(-2.7)
A 		8.1
(0.2)
A 		1.4
(-3)
A 		11.1
(1.6)
A 		13
avr 13
(3) 		7.6
(0.2) 		1.5
(-3) 		4.3
(-1.5) 		2.8
(-2.3) 		9.6
(1.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191660_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11683
Sequence Type Exemplar sequence
Representative Public ID C18B10.8 NCBI
Target Description C18B10.8 /REP_DB=WormBase Gene ID /WP=CE23556 /GEN=srh-125 /TR=P91069 /GB=AAK18892.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072521(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072521 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-125) (srh-125) mRNA, complete cds. 11/11 None
C18B10.8 ENSEMBL cdna:known chromosome:CEL140:V:7478218:7479458:-1 gene:C18B10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000031951 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7478218-7479459(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-125
Ensembl C18B10.8
Entrez Gene 191881 Entrez gene
SwissProt P91069 EMBL-EBI
WormBase CE23556 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18892 Serpentine receptor, class h protein 125 [Caenorhabditis elegans] ref|NP_504922.1| Serpentine Receptor, class H family member (srh-125) [Caenorhabditis elegans] 1.0E-176
blast H89102 protein C18B10.8 [imported] - Caenorhabditis elegans 1.0E-167
blast NP_503718 Serpentine Receptor, class H family member (srh-271) [Caenorhabditis elegans] gb|AAF60378.2| Serpentine receptor, class h protein 271 [Caenorhabditis elegans] 4.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504922.1 8 20-42,61-83,98-120,140-159,169-191,198-220,247-269,276-298
C18B10.8 8 20-42,61-83,98-120,140-159,169-191,198-220,247-269,276-298
Sequence
Target Sequence 
>C. ELEGANS:191660_AT
ttgaaaatcgtttctccctgttgaccgaaaacctcaaatggaagaaaattagatttgtat
atatttcattaaactacttatcggcgtttttgttttttgtgtacccaatgatccaaattc
ctgatcaaaatattggtaggagtgaactcattgcgagttctccgtgtttggctgaattac
tgggatcccttatttcatcgatatttataatcactaggaatccattgtcaactgcagttc
caatgttcatcgaaatgtttttcatcatttctcaagtcacaataattacaattttaactt
atcaatgcctggcaacacaaaaatttcgtatgtcacaaactacatatcaaatgcagaata
ggttcgtcaaggcgctatctgtgcaatttctactgttcattacgtgtcttggagctccag
tgggattattcaccttttcgatgttattgaatgattataatcagggactgaacaatttgt
gtataattggactatcacttaatggaagtatatcaactctatcaatgatggctctgcatc
aaccataccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAAAATCGTTTCTCCCTGTTGAC 293 701 371 Antisense
GTGTACCCAATGATCCAAATTCCTG 19 485 469 Antisense
CTCATTGCGAGTTCTCCGTGTTTGG 401 229 517 Antisense
TACTGGGATCCCTTATTTCATCGAT 176 645 548 Antisense
AGGAATCCATTGTCAACTGCAGTTC 118 55 586 Antisense
GTTTTTCATCATTTCTCAAGTCACA 94 449 627 Antisense
GTTCGTCAAGGCGCTATCTGTGCAA 233 443 732 Antisense
ATCTGTGCAATTTCTACTGTTCATT 91 35 747 Antisense
TTCATTACGTGTCTTGGAGCTCCAG 473 687 766 Antisense
GGGATTATTCACCTTTTCGATGTTA 209 497 792 Antisense
TGATGGCTCTGCATCAACCATACCG 464 567 896 Antisense
Sequence Source Affymetrix Proprietary Database