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[191657_s_at]

Description H30A04.1 /REP_DB=WormBase Gene ID /WP=CE18828 /CHR=X /FEA=Sanger Annotation /DEF=EGF-like domain (3 domains) (HINXTON) TR:Q9XXU1 protein_id:CAA15516.1
Cluster 6grp_total > 91      4grp_total > 58      6grp_cgc > 97      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 13.3
(-1.5)
A 		30.5
(2.1)
A 		35
(3)
A 		6
(-3)
A 		29
B 6.6
(-2.5)
A 		26.8
(3)
A 		23.4
(2.1)
A 		4.8
(-3)
A 		22
C 16.2
(-0.4)
A 		32.8
(3)
A 		26
(1.6)
A 		3.2
(-3)
A 		30
avr 12
(-1.3) 		30
(3) 		28.1
(2.5) 		4.7
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 13.9
(-2.9)
A 		17.4
(-2.6)
A 		14.4
(-2.9)
A 		13.4
(-3)
A 		73.3
(3)
A 		15.5
(-2.8)
A 		60
B 20.2
(-2.2)
A 		59.6
(1.5)
A 		11.2
(-3)
A 		76.1
(3)
A 		37.5
(-0.6)
A 		12
(-2.9)
A 		65
C 17
(-0.6)
A 		6.4
(-3)
A 		18
(-0.4)
A 		33.2
(3)
A 		18.4
(-0.3)
A 		11.9
(-1.8)
A 		27
avr 17
(-2.2) 		27.8
(-0.1) 		14.5
(-2.7) 		40.9
(2.6) 		43.1
(3) 		13.1
(-3) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.9
(-0.1)
A 		6.6
(1.1)
A 		9.2
(3)
A 		0.9
(-3)
A 		8
B 2.1
(-1.8)
A 		6.6
(3)
A 		5.4
(1.7)
A 		1
(-3)
A 		6
C 5.4
(0.3)
A 		9.4
(3)
A 		9.1
(2.8)
A 		0.5
(-3)
A 		9
avr 4.1
(-0.2) 		7.5
(2.7) 		7.9
(3) 		0.8
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.6
(-3)
A 		6.2
(-1.9)
A 		3.1
(-2.8)
A 		3.4
(-2.8)
A 		22.1
(3)
A 		3.8
(-2.6)
A 		20
B 7
(-1.5)
A 		19.8
(2.9)
A 		2.7
(-3)
A 		20.2
(3)
A 		15.3
(1.3)
A 		4.5
(-2.4)
A 		18
C 6.3
(2.5)
A 		1.9
(-3)
A 		4.6
(0.4)
A 		6.7
(3)
A 		6
(2.1)
A 		4
(-0.4)
A 		5
avr 5.3
(-2) 		9.3
(0.2) 		3.5
(-3) 		10.1
(0.6) 		14.5
(3) 		4.1
(-2.7) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191657_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17950
Sequence Type Exemplar sequence
Representative Public ID H30A04.1 NCBI
Target Description H30A04.1 /REP_DB=WormBase Gene ID /WP=CE18828 /CHR=X /FEA=Sanger Annotation /DEF=EGF-like domain (3 domains) (HINXTON) TR:Q9XXU1 protein_id:CAA15516.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029570(11), NM_001029569(11), NR_002425(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029570 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-20) (eat-20) mRNA, complete cds. 11/11 None
NM_001029569 NCBI Caenorhabditis elegans EATing: abnormal pharyngeal pumping family member (eat-20) (eat-20) mRNA, complete cds. 11/11 None
NR_002425 NCBI Caenorhabditis elegans eat-20, miscRNA. 11/11 None
GENEFINDER00000022671 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:15515210:15523213:1 11/11 None
SNAP00000022669 ENSEMBL cdna:SNAP chromosome:CEL140:X:15520884:15523213:1 11/11 None
H30A04.1b ENSEMBL cdna:known chromosome:CEL140:X:15516573:15523926:1 gene:H30A04.1 11/11 A 
H30A04.1a ENSEMBL cdna:known chromosome:CEL140:X:15516573:15523857:1 gene:H30A04.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:15516674-15523213(+) 100.0 100.0
Public Domain and Genome References
Ensembl H30A04.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42315 Hypothetical protein H30A04.1b [Caenorhabditis elegans] ref|NP_001024741.1| EATing: abnormal pharyngeal pumping family member (eat-20) [Caenorhabditis elegans] dbj|BAA92158.1| EAT-20B [Caenorhabditis elegans] 0.0
blast CAA15516 Hypothetical protein H30A04.1a [Caenorhabditis elegans] ref|NP_001024740.1| EATing: abnormal pharyngeal pumping family member (eat-20) [Caenorhabditis elegans] dbj|BAA92157.1| EAT-20A [Caenorhabditis elegans] 0.0
blast CAE63325 Hypothetical protein CBG07717 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.8E-8
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Pfam IPR006209 EMBL-EBI EGF-like domain 2.3E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024741.1 1 748-770
NP_001024740.1 1 746-768
H30A04.1b 1 748-770
H30A04.1a 1 746-768
GENEFINDER00000022671 2 34-56,987-1009
SNAP00000022669 1 399-421
Sequence
Target Sequence 
>C. ELEGANS:191657_S_AT
gtcactgatagctcaacgcaaccatcaactactgtctttgttcaaccaaccaccacattc
accacagaagctccaacgaccacaatggaggaggaagaggaaatgacgactgatcaagtg
gaggacatcgagtctgaagagattgcaaccacgacaacacagacaagcttgccgttctgg
atgaccactaccaataagcaagttgtaccagatagcccaacaccaatggttatcatgcca
catcctcaaccagatgagaagatggaaacgagtacggaaggagttgttgacgaggagagc
gacgaggaaagaacgacagaatcaaacgaagaagttgtgacaaagaatgctgaagccacc
actccatcagatatcacacatcatcacacctcgagtggaaagcagtcgagcgcagctgcc
agctggataatcgctatcattgctttaattgtactcggccttttgcttcttgccaccagc
ttgttcattcttcgatacattcgccagtcacgtaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCACTGATAGCTCAACGCAACCAT 368 465 1825 Antisense
AACGCAACCATCAACTACTGTCTTT 587 145 1839 Antisense
CTACTGTCTTTGTTCAACCAACCAC 202 227 1853 Antisense
GACAACACAGACAAGCTTGCCGTTC 597 365 1977 Antisense
AATGGTTATCATGCCACATCCTCAA 400 163 2049 Antisense
ACCACTCCATCAGATATCACACATC 509 85 2182 Antisense
TCACACATCATCACACCTCGAGTGG 643 627 2198 Antisense
GGAAAGCAGTCGAGCGCAGCTGCCA 268 527 2221 Antisense
AGCTGCCAGCTGGATAATCGCTATC 326 81 2238 Antisense
TTAATTGTACTCGGCCTTTTGCTTC 431 685 2269 Antisense
TTCGATACATTCGCCAGTCACGTAA 292 695 2315 Antisense
Sequence Source Affymetrix Proprietary Database