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[191656_at] 7TM chemoreceptor, str family

Description E03H12.1 /REP_DB=WormBase Gene ID /WP=CE09140 /GEN=str-162 /TR=O02132 /GB=AAC47986.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 12      4grp_total > 11      6grp_cgc > 62      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 312
1 2 3 4 range
A 68.6
(-1.7)
A 		51.6
(-2.1)
A 		2.8
(-3)
A 		315
(3)
P 		312
B 79.9
(-0.6)
P 		93.7
(-0.2)
A 		4.8
(-3)
A 		194.9
(3)
P 		190
C 69.3
(-2)
A 		63.5
(-2.2)
A 		39.7
(-3)
A 		217.9
(3)
P 		178
avr 72.6
(-1.5) 		69.6
(-1.6) 		15.8
(-3) 		242.6
(3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 55.8
(-0.4)
A 		82.1
(2.9)
A 		83
(3)
A 		40
(-2.3)
A 		56.4
(-0.3)
A 		34.4
(-3)
A 		49
B 79.8
(0.5)
A 		110.1
(3)
A 		88.3
(1.2)
A 		86.7
(1.1)
A 		51.7
(-1.8)
A 		37.3
(-3)
A 		73
C 71.1
(3)
A 		64.3
(1.8)
M 		37.9
(-3)
A 		70.2
(2.8)
A 		48.9
(-1)
A 		39.6
(-2.7)
A 		33
avr 68.9
(0.9) 		85.5
(3) 		69.7
(1) 		65.6
(0.5) 		52.3
(-1.1) 		37.1
(-3) 		48
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 25
(0.2)
A 		11.2
(-1.6)
A 		0.7
(-3)
A 		46.1
(3)
P 		45
B 25.5
(0.6)
P 		23.1
(0.3)
A 		1.1
(-3)
A 		41.5
(3)
P 		40
C 22.9
(-0.6)
A 		18.3
(-1.8)
A 		13.8
(-3)
A 		36.7
(3)
P 		23
avr 24.5
(0.2) 		17.5
(-1) 		5.2
(-3) 		41.4
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 10.3
(-2.5)
A 		29.2
(3)
A 		18.1
(-0.2)
A 		10.1
(-2.5)
A 		17
(-0.5)
A 		8.4
(-3)
A 		21
B 27.8
(0.7)
A 		36.6
(3)
A 		21.4
(-1)
A 		23
(-0.6)
A 		21
(-1.1)
A 		13.9
(-3)
A 		23
C 26.3
(3)
A 		19.6
(0.6)
M 		9.6
(-3)
A 		14.1
(-1.4)
A 		15.8
(-0.8)
A 		13.3
(-1.7)
A 		17
avr 21.5
(0.5) 		28.5
(3) 		16.4
(-1.4) 		15.7
(-1.6) 		17.9
(-0.8) 		11.9
(-3) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191656_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10517
Sequence Type Exemplar sequence
Representative Public ID E03H12.1 NCBI
Target Description E03H12.1 /REP_DB=WormBase Gene ID /WP=CE09140 /GEN=str-162 /TR=O02132 /GB=AAC47986.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068295(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068295 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-162) (str-162) mRNA, complete cds. 11/11 None
SNAP00000020614 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4992525:4993847:1 11/11 None
GENEFINDER00000020620 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4992399:4994000:1 11/11 None
E03H12.1 ENSEMBL cdna:known chromosome:CEL140:IV:4992399:4993847:1 gene:E03H12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4992404-4993853(+) 99.41 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-162
Ensembl E03H12.1
Entrez Gene 192020 Entrez gene
SwissProt O02132 EMBL-EBI
WormBase CE09140 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500696 Seven TM Receptor family member (str-162) [Caenorhabditis elegans] gb|AAC47986.1| Seven tm receptor protein 162 [Caenorhabditis elegans] 0.0
blast NP_500696 Seven TM Receptor family member (str-162) [Caenorhabditis elegans] gb|AAC47986.1| Seven tm receptor protein 162 [Caenorhabditis elegans] 1.0E-160
blast CAE56071 Hypothetical protein CBG23649 [Caenorhabditis briggsae] 5.0E-78
blast CAE56071 Hypothetical protein CBG23649 [Caenorhabditis briggsae] 6.0E-78
blast CAE56071 Hypothetical protein CBG23649 [Caenorhabditis briggsae] 7.0E-78
blast CAE66374 Hypothetical protein CBG11634 [Caenorhabditis briggsae] 6.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-17
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 3.0E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500696.1 8 12-29,44-66,87-109,129-151,164-183,198-220,249-271,281-303
E03H12.1 8 12-29,44-66,87-109,129-151,164-183,198-220,249-271,281-303
SNAP00000020614 7 4-25,45-67,87-109,122-141,156-178,207-229,239-261
GENEFINDER00000020620 8 12-29,44-66,87-109,129-151,164-183,198-220,249-271,352-374
Sequence
Target Sequence 
>C. ELEGANS:191656_AT
attggttgtctgtaccgcttattagtggattcttgtgggctcagacactttttgcgtttt
tatacgaagatactgaaagctcggattatatgagagaaatattacttgaaaattatggtc
taaatatctctgatataacctatgtgggagttttatactacaaaaagtcaatttccggta
gcggcactgaaccaaattttactggacttcaaggtgtttgtgttttgggtacaattatga
cagtatgcttctgcttcattatttacttcggtacattgacctacaaaagaatcatgcatt
tgatattggaaggaagatcagaatatacgagaagacttcaaaaacaattgtatcaagcac
ttgttattcagacaataattcccatattctttttgattctaccacttaccatatacttct
actctccgttattccattttggtaatcaaacgattggtgactggactgctttgagtacag
ccatctacccgattattgacccgctacctgtcatttttgtcattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTGGTTGTCTGTACCGCTTATTAG 395 3 401 Antisense
GGATTCTTGTGGGCTCAGACACTTT 255 509 427 Antisense
ATTTCCGGTAGCGGCACTGAACCAA 107 13 571 Antisense
GCTTCTGCTTCATTATTTACTTCGG 150 307 647 Antisense
TTTACTTCGGTACATTGACCTACAA 306 289 662 Antisense
TATTCTTTTTGATTCTACCACTTAC 59 665 785 Antisense
TACCACTTACCATATACTTCTACTC 116 649 800 Antisense
CTACTCTCCGTTATTCCATTTTGGT 130 223 819 Antisense
AACGATTGGTGACTGGACTGCTTTG 683 143 849 Antisense
TGCTTTGAGTACAGCCATCTACCCG 436 579 867 Antisense
CGCTACCTGTCATTTTTGTCATTGA 580 255 902 Antisense
Sequence Source Affymetrix Proprietary Database