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[191655_at]

Description T13H5.2 /REP_DB=WormBase Gene ID /WP=CE03653 /TR=Q22467 /GB=CAA91418.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=retinal-binding like protein
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 87      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 85      6grp_total > 87      4grp_total > 62      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 817.9
(3)
P 		681.4
(0.7)
P 		774.5
(2.3)
P 		465.8
(-3)
P 		352
B 812.2
(3)
P 		577.8
(-0.7)
P 		751.7
(2)
P 		432.1
(-3)
P 		380
C 799.7
(3)
P 		603.8
(-0.7)
P 		790.7
(2.8)
P 		480.9
(-3)
P 		319
avr 809.9
(3) 		621
(-0.2) 		772.3
(2.4) 		459.6
(-3) 		350

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 444
1 2 3 4 5 6 range
A 707.4
(-2.1)
P 		694.1
(-2.4)
P 		660.1
(-3)
P 		801.9
(-0.4)
P 		799
(-0.4)
P 		983.8
(3)
P 		324
B 607.5
(-1.9)
P 		550.6
(-2.8)
P 		540.3
(-3)
P 		618.2
(-1.7)
P 		735.4
(0.2)
P 		907.1
(3)
P 		367
C 634.9
(-1.3)
P 		596.8
(-2.3)
P 		768.3
(2)
P 		568.1
(-3)
P 		694.3
(0.1)
P 		808.7
(3)
P 		241
avr 649.9
(-2.2) 		613.8
(-3) 		656.2
(-2.1) 		662.7
(-2) 		742.9
(-0.3) 		899.9
(3) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 230
1 2 3 4 range
A 297.8
(3)
P 		147.9
(-0.9)
P 		202.5
(0.5)
P 		68.2
(-3)
P 		230
B 259
(3)
P 		142.7
(-1.2)
P 		174.2
(-0)
P 		92.1
(-3)
P 		167
C 264.7
(2.7)
P 		173.6
(-0.1)
P 		275.6
(3)
P 		81.1
(-3)
P 		195
avr 273.8
(3) 		154.7
(-0.7) 		217.4
(1.2) 		80.5
(-3) 		193

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 130.4
(-3)
P 		246.9
(3)
P 		143.7
(-2.3)
P 		203.4
(0.8)
P 		241.1
(2.7)
P 		239.5
(2.6)
P 		117
B 211.4
(-0.7)
P 		183.3
(-1.5)
P 		131.2
(-3)
P 		163.7
(-2.1)
P 		298.8
(1.9)
P 		338.3
(3)
P 		207
C 235.3
(1.6)
P 		182.1
(-0.4)
P 		195.5
(0.1)
P 		114.2
(-3)
P 		224.7
(1.2)
P 		270.7
(3)
P 		157
avr 192.4
(-1.3) 		204.1
(-0.7) 		156.8
(-3) 		160.4
(-2.8) 		254.9
(1.7) 		282.8
(3) 		126
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191655_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2821
Sequence Type Exemplar sequence
Representative Public ID T13H5.2 NCBI
Target Description T13H5.2 /REP_DB=WormBase Gene ID /WP=CE03653 /TR=Q22467 /GB=CAA91418.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=retinal-binding like protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063396(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063396 NCBI Caenorhabditis elegans T13H5.8 (T13H5.8) mRNA, complete cds. 11/11 None
SNAP00000035142 ENSEMBL cdna:SNAP chromosome:CEL140:II:8518432:8520403:1 11/11 None
GENEFINDER00000035153 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8518432:8520403:1 11/11 None
T13H5.8.2 ENSEMBL cdna:known chromosome:CEL140:II:8518430:8520403:1 gene:T13H5.8 11/11 None
T13H5.8.1 ENSEMBL cdna:known chromosome:CEL140:II:8518432:8520618:1 gene:T13H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8514972-8520400(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T13H5.8
Entrez Gene 174362 Entrez gene
SwissProt Q95QB1 EMBL-EBI
WormBase CE28961 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1584112_AT similar to cisplatin resistance related protein CRR9p cfa
CANINE_2:CFA.5241.1.A1_AT similar to cisplatin resistance related protein CRR9p cfa
CANINE_2:CFAAFFX.16780.1.S1_S_AT similar to cisplatin resistance related protein CRR9p cfa
CANINE_2:CFAAFFX.16782.1.S1_S_AT similar to cisplatin resistance related protein CRR9p cfa
DROSOPHILA_2:1628123_AT dm
DROSGENOME1:154949_AT dm
CHICKEN:GGA.19279.1.S1_AT cisplatin resistance related protein CRR9p gga
CHICKEN:GGA.8790.1.S1_S_AT cisplatin resistance related protein CRR9p gga
CHICKEN:GGAAFFX.12197.1.S1_AT cisplatin resistance related protein CRR9p gga
HG-U133_PLUS_2:226935_S_AT cisplatin resistance related protein CRR9p hs
HG-U133B:226935_S_AT cisplatin resistance related protein CRR9p hs
HG-U133B:223020_AT cisplatin resistance related protein CRR9p hs
HG-U133_PLUS_2:223020_AT cisplatin resistance related protein CRR9p hs
HU35KSUBA:AA452082_AT cisplatin resistance related protein CRR9p hs
HU35KSUBA:RC_AA282269_AT cisplatin resistance related protein CRR9p hs
U133_X3P:G12248401_3P_A_AT cisplatin resistance related protein CRR9p hs
HG-U95B:56492_AT cisplatin resistance related protein CRR9p hs
HG-U133_PLUS_2:229416_AT Cisplatin resistance related protein CRR9p hs
HG-U133B:229416_AT Cisplatin resistance related protein CRR9p hs
HG-U95C:61304_AT Cisplatin resistance related protein CRR9p hs
HU35KSUBA:RC_AA251017_AT Cisplatin resistance related protein CRR9p hs
U133_X3P:HS.323769.1.A1_3P_AT Cisplatin resistance related protein CRR9p hs
MOE430A:1423730_AT RIKEN cDNA C130052I12 gene mm
MOUSE430A_2:1423730_AT RIKEN cDNA C130052I12 gene mm
MOUSE430_2:1423730_AT RIKEN cDNA C130052I12 gene mm
MU11KSUBA:AA682058_RC_S_AT RIKEN cDNA C130052I12 gene mm
MG-U74AV2:160386_AT RIKEN cDNA C130052I12 gene mm
MG-U74BV2:117222_AT RIKEN cDNA C130052I12 gene (C130052I12Rik), mRNA mm
MU19KSUBA:TC23337_AT RIKEN cDNA C130052I12 gene (C130052I12Rik), mRNA mm
RG-U34B:RC_AI013387_AT similar to cisplatin resistance related protein CRR9p (predicted) rn
RAE230A:1388861_AT similar to cisplatin resistance related protein CRR9p (predicted) rn
RAT230_2:1388861_AT similar to cisplatin resistance related protein CRR9p (predicted) rn
RG-U34C:RC_AI101462_AT Similar to cisplatin resistance related protein CRR9p (predicted) rn
RG-U34C:RC_AI101462_G_AT Similar to cisplatin resistance related protein CRR9p (predicted) rn
RG-U34C:RC_AI102348_AT Similar to cisplatin resistance related protein CRR9p (predicted) rn
RG-U34C:RC_AI178551_AT Similar to cisplatin resistance related protein CRR9p (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAC70104 Hypothetical protein T13H5.8 [Caenorhabditis elegans] ref|NP_495797.1| T13H5.8 [Caenorhabditis elegans] 0.0
blast CAE61012 Hypothetical protein CBG04750 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR008429 EMBL-EBI Cleft lip and palate transmembrane 1 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495797.1 6 282-304,324-346,351-373,404-426,433-455,465-487
T13H5.8.2 6 282-304,324-346,351-373,404-426,433-455,465-487
T13H5.8.1 6 282-304,324-346,351-373,404-426,433-455,465-487
SNAP00000035142 6 282-304,324-346,351-373,404-426,433-455,465-487
GENEFINDER00000035153 6 282-304,324-346,351-373,404-426,433-455,465-487
Sequence
Target Sequence 
>C. ELEGANS:191655_AT
gacgaaactgattccatcgactcgcaagccatgaagtacctgtcgattcttttagttcca
cttgttattggtggagctatctatagcttactttacgttcctcataaatcatggcgatca
tggattctggaaacatctgctaatggagtttatgcttttggcttcttgtttatgttacca
caattgtttgtcaattacaagttaaagagtgtggcacatcttccatggagagctttcatg
tacaaggcattcaatacgtttattgatgacttgtttgcatttgtcataaccatgccaact
gctcatcgtatggcctgcttcagagacgatattgtgttccttgtatatctctaccaaaga
tggctgtatccagttgattacaccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAAACTGATTCCATCGACTCGC 301 379 3250 Antisense
CTCGCAAGCCATGAAGTACCTGTCG 237 227 3270 Antisense
GTACCTGTCGATTCTTTTAGTTCCA 68 459 3285 Antisense
TATAGCTTACTTTACGTTCCTCATA 202 661 3331 Antisense
GCTTTTGGCTTCTTGTTTATGTTAC 402 303 3403 Antisense
GTGTGGCACATCTTCCATGGAGAGC 550 487 3458 Antisense
TTGTCATAACCATGCCAACTGCTCA 284 707 3530 Antisense
GCCAACTGCTCATCGTATGGCCTGC 680 277 3543 Antisense
GGCCTGCTTCAGAGACGATATTGTG 698 541 3561 Antisense
GTGTTCCTTGTATATCTCTACCAAA 509 485 3583 Antisense
GGCTGTATCCAGTTGATTACACCAG 337 539 3611 Antisense
Sequence Source Affymetrix Proprietary Database