[Home] | [Total List]

[191653_at] glutathione S-transferase

Description T28A11.11 /REP_DB=WormBase Gene ID /WP=CE17270 /TR=P91505 /GB=AAC48132.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 31      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 90      6grp_total > 31      4grp_total > 18      6grp_cgc > 71      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 135
(-1.1)
P 		169.4
(1.5)
P 		110.4
(-3)
P 		189.1
(3)
P 		79
B 167.7
(-3)
P 		186.2
(-0.5)
P 		196.3
(0.9)
P 		212.1
(3)
P 		44
C 141
(-2.6)
P 		159.4
(-2)
P 		131.6
(-3)
P 		292.1
(3)
P 		161
avr 147.9
(-2.9) 		171.7
(-1.2) 		146.1
(-3) 		231.1
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 181.1
(0.5)
P 		132.6
(-1.8)
P 		235.2
(3)
P 		177.9
(0.3)
P 		163.6
(-0.4)
P 		107.4
(-3)
P 		128
B 136.9
(-1.9)
P 		183.7
(3)
P 		163.9
(0.9)
P 		127.6
(-2.9)
P 		126.6
(-3)
P 		135
(-2.1)
P 		57
C 163.2
(0.8)
P 		194.3
(3)
P 		164.3
(0.8)
P 		160.3
(0.5)
P 		111.2
(-3)
P 		131.7
(-1.5)
P 		83
avr 160.4
(0.4) 		170.2
(1.3) 		187.8
(3) 		155.3
(-0.1) 		133.8
(-2.1) 		124.7
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 49.1
(3)
P 		36.8
(-0.4)
P 		28.9
(-2.7)
P 		27.7
(-3)
P 		21
B 53.5
(3)
P 		46
(-2.4)
P 		45.5
(-2.8)
P 		45.2
(-3)
P 		8
C 46.7
(-1.4)
P 		45.8
(-3)
P 		45.9
(-2.8)
P 		49.2
(3)
P 		3
avr 49.8
(3) 		42.9
(-1.3) 		40.1
(-3) 		40.7
(-2.6) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 33.4
(-1.3)
P 		47.2
(2)
P 		51.2
(3)
P 		45.1
(1.5)
P 		49.4
(2.6)
P 		26.1
(-3)
P 		25
B 47.6
(0)
P 		61.2
(3)
P 		39.8
(-1.7)
P 		33.8
(-3)
P 		51.4
(0.9)
P 		50.3
(0.6)
P 		27
C 60.5
(3)
P 		59.3
(2.7)
P 		41.8
(-1)
P 		32.2
(-3)
P 		36
(-2.2)
P 		44.1
(-0.5)
P 		28
avr 47.2
(0.2) 		55.9
(3) 		44.3
(-0.7) 		37
(-3) 		45.6
(-0.3) 		40.2
(-2) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191653_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15933
Sequence Type Exemplar sequence
Representative Public ID T28A11.11 NCBI
Target Description T28A11.11 /REP_DB=WormBase Gene ID /WP=CE17270 /TR=P91505 /GB=AAC48132.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=glutathione S-transferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071488 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-23) (gst-23) mRNA, complete cds. 11/11 None
SNAP00000028200 ENSEMBL cdna:SNAP chromosome:CEL140:V:3243122:3244267:1 11/11 None
GENEFINDER00000028237 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3243122:3244267:1 11/11 None
T28A11.11 ENSEMBL cdna:known chromosome:CEL140:V:3243122:3244267:1 gene:T28A11.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3243121-3244267(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-23
Ensembl T28A11.11
Entrez Gene 189017 Entrez gene
SwissProt P91505 EMBL-EBI
WormBase CE17270 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1587964_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE:1583308_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE_2:CFA.8070.1.A1_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE_2:CFAAFFX.17681.1.S1_X_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE_2:CFAAFFX.3092.1.S1_X_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE_2:CFAAFFX.29492.1.S1_X_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
CANINE_2:CFAAFFX.17810.1.S1_X_AT similar to Glutathione S-transferase P (GST 7-7) (Chain 7) (GST class-pi) cfa
HG-U133_PLUS_2:200824_AT glutathione S-transferase pi hs
HG-U133A:200824_AT glutathione S-transferase pi hs
HG-U133A_2:200824_AT glutathione S-transferase pi hs
HG-FOCUS:200824_AT glutathione S-transferase pi hs
HG-U95AV2:829_S_AT glutathione S-transferase pi hs
HC-G110:829_S_AT glutathione S-transferase pi hs
HUGENEFL:U21689_AT glutathione S-transferase pi hs
HUGENEFL:M24485_S_AT glutathione S-transferase pi hs
U133_X3P:G6552334_3P_X_AT glutathione S-transferase pi hs
U133_X3P:G6552334_3P_S_AT glutathione S-transferase pi hs
U133_X3P:G6552334_3P_AT glutathione S-transferase pi hs
U133_X3P:200824_3P_AT glutathione S-transferase pi hs
HG-U95AV2:33396_AT glutathione S-transferase pi hs
RT-U34:RC_AI012589_S_AT glutathione S-transferase, pi 2 rn
RG-U34A:RC_AI012589_S_AT glutathione S-transferase, pi 2 rn
RT-U34:X02904CDS_S_AT glutathione S-transferase, pi 2 rn
RG-U34A:X02904CDS_S_AT glutathione S-transferase, pi 2 rn
RAE230A:1388122_AT glutathione S-transferase, pi 2 rn
RAT230_2:1388122_AT glutathione S-transferase, pi 2 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4364 glutathione transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503889 Glutathione S-Transferase family member (gst-23) [Caenorhabditis elegans] gb|AAC48132.1| Glutathione s-transferase protein 23 [Caenorhabditis elegans] 1.0E-116
blast CAE62680 Hypothetical protein CBG06825 [Caenorhabditis briggsae] 6.0E-80
blast CAA78471 Hypothetical protein R107.7 [Caenorhabditis elegans] emb|CAA31979.1| unnamed protein product [Caenorhabditis elegans] ref|NP_499006.1| Glutathione S-Transferase family member (gst-1) [Caenorhabditis elegans] sp|P10299|GSTP1_CAEEL Glutathione S-transferase P (GST class-pi) 3.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 7.8E-19
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.9E-18
Sequence
Target Sequence 
>C. ELEGANS:191653_AT
acatactttgacattcgtgggctcgcggagcccattcggctcttgctcaatgaccaggaa
atcccatttgaagataaccgtatcagccgagaagagtgggccgaaatgaagtcaaccatg
attttcgctcaattgccgtgtcttcatatcggaactgaaacgattgtccagtcagcagcg
attcttcgtcatcttggacggatttatggactcaatggctccactgaatcagagacctca
ttcatcgatatgttctccgaagggctccgcgatctacgcaccaaatatttcacaatgatc
aagacagactacgaagatggcaaagaagcatacataactgaaactcttcccggggagcta
ctacgaattgagaagttgttctgcacatttaacaacggcgaaaactttgtgtccggggac
aagctgagctatgcagattatgctctattcgagcttctcgatattcacctcatcctcaca
ccaactgctctaaatggcaccccagcactgaaaagatttcatggacgatttgcagagcgg
cccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATACTTTGACATTCGTGGGCTCG 153 105 28 Antisense
TCGGCTCTTGCTCAATGACCAGGAA 370 607 63 Antisense
GAAGTCAACCATGATTTTCGCTCAA 96 337 135 Antisense
ATTGCCGTGTCTTCATATCGGAACT 244 7 159 Antisense
AAACGATTGTCCAGTCAGCAGCGAT 271 125 185 Antisense
TCAGCAGCGATTCTTCGTCATCTTG 45 625 199 Antisense
GGACTCAATGGCTCCACTGAATCAG 494 525 235 Antisense
GACCTCATTCATCGATATGTTCTCC 224 383 261 Antisense
GCGATCTACGCACCAAATATTTCAC 210 291 296 Antisense
TGAAACTCTTCCCGGGGAGCTACTA 524 571 366 Antisense
ATGGACGATTTGCAGAGCGGCCCAA 127 53 548 Antisense
Sequence Source Affymetrix Proprietary Database