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[191652_at] cystathione gamma-lyase like

Description F22B8.6 /REP_DB=WormBase Gene ID /WP=CE15884 /TR=O45391 /GB=CAB05492.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cystathione gamma-lyase like
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 14      6grp_highest_nonorm > 25      6grp_total > 20      4grp_total > 09      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 801
1 2 3 4 range
A 442.6
(-3)
P 		489.9
(-2.4)
A 		582.1
(-1.3)
M 		933.3
(3)
P 		491
B 366.7
(-3)
P 		483.2
(-2.1)
P 		560.1
(-1.6)
P 		1168.1
(3)
P 		801
C 417.7
(-3)
P 		433.9
(-2.8)
A 		490.5
(-2.3)
P 		1039
(3)
P 		621
avr 409
(-3) 		469
(-2.4) 		544.2
(-1.7) 		1046.8
(3) 		638

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3195
1 2 3 4 5 6 range
A 3727.5
(-0.1)
P 		5297.5
(3)
P 		5202.6
(2.8)
P 		3643.5
(-0.2)
P 		2946.2
(-1.6)
P 		2241.2
(-3)
P 		3056
B 2957.7
(-2.1)
P 		5257.7
(3)
P 		4482.2
(1.3)
P 		3630.2
(-0.6)
P 		2957.5
(-2.1)
P 		2536.5
(-3)
P 		2721
C 2539.5
(-2.9)
P 		5435.7
(3)
P 		5080.2
(2.3)
P 		3509.1
(-0.9)
P 		2623.5
(-2.7)
P 		2479.3
(-3)
P 		2956
avr 3074.9
(-1.6) 		5330.3
(3) 		4921.7
(2.2) 		3594.3
(-0.6) 		2842.4
(-2.1) 		2419
(-3) 		2911
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 161.1
(3)
P 		106.3
(-3)
A 		152.2
(2)
M 		136.6
(0.3)
P 		55
B 116.9
(-3)
P 		119.3
(-2.9)
P 		129.8
(-2.4)
P 		248.9
(3)
P 		132
C 138.3
(-1.4)
P 		124.8
(-3)
A 		171
(2.5)
P 		175.2
(3)
P 		50
avr 138.8
(-1.1) 		116.8
(-3) 		151
(-0.1) 		186.9
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1338
1 2 3 4 5 6 range
A 687.1
(-2.4)
P 		1884.1
(3)
P 		1133
(-0.4)
P 		924.1
(-1.3)
P 		889
(-1.5)
P 		545.7
(-3)
P 		1338
B 1029.1
(-2.4)
P 		1750.1
(3)
P 		1088.4
(-1.9)
P 		961.5
(-2.9)
P 		1201.6
(-1.1)
P 		945.8
(-3)
P 		804
C 941.3
(-1.5)
P 		1658.6
(3)
P 		1293
(0.7)
P 		705.7
(-3)
P 		848.9
(-2.1)
P 		830
(-2.2)
P 		953
avr 885.8
(-2.3) 		1764.3
(3) 		1171.5
(-0.6) 		863.8
(-2.5) 		979.8
(-1.8) 		773.8
(-3) 		991
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191652_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14521
Sequence Type Exemplar sequence
Representative Public ID F22B8.6 NCBI
Target Description F22B8.6 /REP_DB=WormBase Gene ID /WP=CE15884 /TR=O45391 /GB=CAB05492.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=cystathione gamma-lyase like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074652(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074652 NCBI Caenorhabditis elegans F22B8.6 (F22B8.6) mRNA, complete cds. 11/11 None
F22B8.6.1 ENSEMBL cdna:known chromosome:CEL140:V:16103238:16105290:1 gene:F22B8.6 11/11 None
F22B8.6.2 ENSEMBL cdna:known chromosome:CEL140:V:16103263:16105258:1 gene:F22B8.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16103280-16105234(+) 100.0 100.0
Public Domain and Genome References
Gene Title cystathione gamma-lyase like
Ensembl F22B8.6
Entrez Gene 180079 Entrez gene
SwissProt O45391 EMBL-EBI
WormBase CE15884 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6520 amino acid metabolism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05492 Hypothetical protein F22B8.6 [Caenorhabditis elegans] ref|NP_507053.1| F22B8.6 [Caenorhabditis elegans] 0.0
blast AAB93432 Hypothetical protein ZK1127.10 [Caenorhabditis elegans] ref|NP_495449.1| ZK1127.10 [Caenorhabditis elegans] sp|P55216|CGL_CAEEL Putative cystathionine gamma-lyase (Gamma-cystathionase) 0.0
blast CAE56905 Hypothetical protein CBG24746 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000277 EMBL-EBI Cys/Met metabolism pyridoxal-phosphate-dependent enzymes 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191652_AT
tctcggcgcagacattgctgttcattcaataaccaaatatattaatggacattctgatat
tattatgggagccgctatcactaataatgacgagttccagcagcatctacacttcatgca
acgtgcaatcggaggtgttccatctccattcgactgtttccttgtcaatcgtggactcaa
aacacttcacgtcagaatgaaggctcactttgaaaacgcgctagccatagccaaattcct
tgaagctcatgactgcatcgaatcggttctctatccagctcttccttcgcatccacagca
cacggttcatgtgaaacaaaccaagggaatgtccggaatgatatcattctatctgaaagg
agaactttgccaaagccgtgcgtttctttctgctctcaaagtgtttacgttggctgaatc
tctcggaggatgtgaatcactggcagagctcccatcaataatgacgcatgcttcggtgcc
gtctgcaactcgtgctgaacttggtattactgataatctcattcgtatttctgttggaat
cgaagatctggatgacctgattgctgatctggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGGCGCAGACATTGCTGTTCAT 56 613 585 Antisense
TGACGAGTTCCAGCAGCATCTACAC 611 567 672 Antisense
AATCGGAGGTGTTCCATCTCCATTC 230 169 711 Antisense
TCCATTCGACTGTTTCCTTGTCAAT 28 591 729 Antisense
GAAGGCTCACTTTGAAAACGCGCTA 274 333 783 Antisense
GACTGCATCGAATCGGTTCTCTATC 603 375 835 Antisense
GCATCCACAGCACACGGTTCATGTG 411 309 873 Antisense
GTTTACGTTGGCTGAATCTCTCGGA 463 449 987 Antisense
TGTGAATCACTGGCAGAGCTCCCAT 514 555 1015 Antisense
TAATGACGCATGCTTCGGTGCCGTC 411 635 1043 Antisense
GATGACCTGATTGCTGATCTGGATC 12 413 1135 Antisense
Sequence Source Affymetrix Proprietary Database