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[191650_at] protein tyrosine phosphatase

Description T04F3.3 /REP_DB=WormBase Gene ID /WP=CE06358 /TR=Q22158 /GB=CAA96670.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 50      4grp_total > 19      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 45.8
(-1.9)
A 		41
(-2.3)
A 		31.8
(-3)
A 		105.9
(3)
A 		74
B 38.9
(-0.8)
A 		51
(0.5)
A 		17.6
(-3)
A 		74.9
(3)
A 		57
C 43.2
(-1.7)
A 		82.8
(-0.1)
A 		12.5
(-3)
A 		159.3
(3)
A 		147
avr 42.6
(-1.6) 		58.3
(-0.6) 		20.6
(-3) 		113.4
(3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 24.7
(-0.2)
A 		7.2
(-2.6)
A 		47.5
(3)
A 		4.1
(-3)
A 		14.1
(-1.6)
A 		7.6
(-2.5)
A 		43
B 52.9
(3)
A 		32.9
(-0.2)
A 		16
(-2.9)
A 		38.1
(0.6)
A 		15.6
(-3)
A 		21.9
(-2)
A 		37
C 34.5
(-0.2)
A 		48.3
(1.7)
A 		51.3
(2.1)
A 		58.2
(3)
A 		14.1
(-2.9)
A 		13.6
(-3)
A 		45
avr 37.4
(2.8) 		29.5
(0.8) 		38.3
(3) 		33.5
(1.8) 		14.6
(-2.9) 		14.4
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 16.7
(3)
A 		8.9
(-2.6)
A 		8.3
(-3)
A 		15.5
(2.1)
A 		8
B 12.4
(1.2)
A 		12.6
(1.3)
A 		4.1
(-3)
A 		16
(3)
A 		12
C 14.3
(-0.3)
A 		23.8
(2.2)
A 		4.3
(-3)
A 		26.9
(3)
A 		23
avr 14.5
(0.8) 		15.1
(1.1) 		5.6
(-3) 		19.5
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.6
(-0.7)
A 		2.5
(-2)
A 		10.4
(3)
A 		1
(-3)
A 		4.2
(-1)
A 		1.9
(-2.4)
A 		9
B 18.4
(3)
A 		11
(-0.1)
A 		3.9
(-3)
A 		10.1
(-0.4)
A 		6.3
(-2)
A 		8.2
(-1.2)
A 		15
C 12.8
(1.9)
A 		14.7
(3)
A 		13.1
(2.1)
A 		11.7
(1.2)
A 		4.6
(-2.9)
A 		4.5
(-3)
A 		10
avr 11.9
(3) 		9.4
(0.9) 		9.1
(0.6) 		7.6
(-0.7) 		5
(-2.9) 		4.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191650_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14501
Sequence Type Exemplar sequence
Representative Public ID T04F3.3 NCBI
Target Description T04F3.3 /REP_DB=WormBase Gene ID /WP=CE06358 /TR=Q22158 /GB=CAA96670.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073564 NCBI Caenorhabditis elegans T04F3.3 (T04F3.3) mRNA, complete cds. 11/11 None
SNAP00000035119 ENSEMBL cdna:SNAP chromosome:CEL140:V:11763523:11764483:1 11/11 None
GENEFINDER00000035121 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11763523:11764483:1 11/11 None
T04F3.3 ENSEMBL cdna:known chromosome:CEL140:V:11761536:11764483:1 gene:T04F3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11761535-11764483(+) 98.22 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
Ensembl T04F3.3
Entrez Gene 188063 Entrez gene
SwissProt Q22158 EMBL-EBI
WormBase CE06358 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96670 Hypothetical protein T04F3.3 [Caenorhabditis elegans] ref|NP_505965.1| T04F3.3 [Caenorhabditis elegans] 0.0
blast CAE75305 Hypothetical protein CBG23275 [Caenorhabditis briggsae] 1.0E-157
blast CAA96670 Hypothetical protein T04F3.3 [Caenorhabditis elegans] ref|NP_505965.1| T04F3.3 [Caenorhabditis elegans] 1.0E-103
blast CAE75304 Hypothetical protein CBG23274 [Caenorhabditis briggsae] 2.0E-62
blast CAE75304 Hypothetical protein CBG23274 [Caenorhabditis briggsae] 7.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-58
Sequence
Target Sequence 
>C. ELEGANS:191650_AT
gaatactctccaataactcaacttgtttcatcagttgctcatcttgttgaaatgcatcaa
aaaagtaaagaaagagaagaagatcatcaaaattcccatggtccaatgtttccggaattc
tcacagctacagagccagatgagacgtaggccatcgatctcagaatctggaatttcattg
aatggaccacgatttaatttaatcccgtacagtcaagacggcctgggttcatctggttca
tcgacaacgtctagaattattaattcaatatctcctgatacgattccacctgtaatgtgg
aggattggtgatctaattggaaagcatgatacaaatgaaaaagagaacttgtacgatatg
actaagatcaaaggattccctattactaaaagtcttgataatgagaaactatttcgagat
gaagattttgcaaataaatcgaataaatcttggacagtcttggaaattgctagaaaaatg
ttgggtgttgatgaaataccgactgccaacgaaggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATACTCTCCAATAACTCAACTTG 378 327 1135 Antisense
TGTTTCATCAGTTGCTCATCTTGTT 316 561 1158 Antisense
GATCATCAAAATTCCCATGGTCCAA 408 419 1216 Antisense
GGTCCAATGTTTCCGGAATTCTCAC 633 501 1234 Antisense
GAATTCTCACAGCTACAGAGCCAGA 26 325 1249 Antisense
AGACGTAGGCCATCGATCTCAGAAT 484 71 1276 Antisense
TTTAATTTAATCCCGTACAGTCAAG 539 221 1327 Antisense
ACAGTCAAGACGGCCTGGGTTCATC 626 105 1343 Antisense
GGTTCATCTGGTTCATCGACAACGT 401 507 1360 Antisense
AATATCTCCTGATACGATTCCACCT 1 175 1401 Antisense
GAAATACCGACTGCCAACGAAGGAA 93 325 1627 Antisense
Sequence Source Affymetrix Proprietary Database