[Home] | [Total List]

[191649_at] 4-coumarate:coenzyme A ligase

Description AH10.1 /REP_DB=WormBase Gene ID /WP=CE07655 /TR=O02200 /GB=CAB02686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=4-coumarate:coenzyme A ligase
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 11.4
(-2.7)
A 		9.1
(-3)
A 		12.8
(-2.5)
A 		55.4
(3)
A 		46
B 9.5
(-2.6)
A 		6.2
(-3)
A 		8.3
(-2.7)
A 		51
(3)
A 		45
C 12
(-2.8)
A 		34
(3)
A 		19
(-0.9)
A 		11.1
(-3)
A 		23
avr 11
(-3) 		16.4
(-1.9) 		13.4
(-2.5) 		39.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 4.1
(-3)
A 		24.2
(-2.2)
A 		57.5
(-1)
A 		57.4
(-1)
A 		128.8
(1.7)
P 		162.1
(3)
P 		158
B 16.9
(-2.5)
A 		4.1
(-3)
A 		10.3
(-2.8)
A 		67.2
(-0.7)
A 		133
(1.7)
P 		167.9
(3)
P 		164
C 4.4
(-3)
A 		18.9
(-2.6)
A 		13.6
(-2.7)
A 		43.9
(-1.8)
A 		92.5
(-0.4)
P 		206.9
(3)
P 		203
avr 8.5
(-3) 		15.7
(-2.7) 		27.1
(-2.3) 		56.2
(-1.3) 		118.1
(0.9) 		179
(3) 		171
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(-0.9)
A 		2
(-3)
A 		3.3
(-1.7)
A 		8.1
(3)
A 		6
B 3
(-2)
A 		1.5
(-3)
A 		1.9
(-2.7)
A 		10.9
(3)
A 		9
C 4
(-1.4)
A 		9.8
(3)
A 		6.6
(0.6)
A 		1.9
(-3)
A 		8
avr 3.7
(-3) 		4.4
(-1.7) 		3.9
(-2.6) 		7
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 0.8
(-3)
A 		8.6
(-1.8)
A 		12.5
(-1.2)
A 		14.5
(-0.9)
A 		38.9
(2.9)
P 		39.5
(3)
P 		39
B 5.9
(-2.6)
A 		1.4
(-3)
A 		2.5
(-2.9)
A 		17.8
(-1.4)
A 		54
(2.2)
P 		62.6
(3)
P 		61
C 1.6
(-3)
A 		5.8
(-2.6)
A 		3.5
(-2.8)
A 		8.8
(-2.4)
A 		29.9
(-0.5)
P 		69.2
(3)
P 		68
avr 2.8
(-3) 		5.3
(-2.7) 		6.2
(-2.6) 		13.7
(-1.8) 		40.9
(1.2) 		57.1
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191649_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13222
Sequence Type Exemplar sequence
Representative Public ID AH10.1 NCBI
Target Description AH10.1 /REP_DB=WormBase Gene ID /WP=CE07655 /TR=O02200 /GB=CAB02686.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=4-coumarate:coenzyme A ligase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074101(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074101 NCBI Caenorhabditis elegans AH10.1 (AH10.1) mRNA, complete cds. 11/11 None
SNAP00000021616 ENSEMBL cdna:SNAP chromosome:CEL140:V:14149237:14151372:1 11/11 None
AH10.1 ENSEMBL cdna:known chromosome:CEL140:V:14149237:14151372:1 gene:AH10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14149236-14151372(+) 100.0 100.0
Public Domain and Genome References
Gene Title 4-coumarate:coenzyme A ligase
Ensembl AH10.1
Entrez Gene 179913 Entrez gene
SwissProt O02200 EMBL-EBI
WormBase CE07655 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:256186_AT 4-coumarate--CoA ligase 1 / 4-coumaroyl-CoA synthase 1 (4CL1) at
ATGENOME1:15620_S_AT 4-coumarate--CoA ligase 1 / 4-coumaroyl-CoA synthase 1 (4CL1) at
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02686 Hypothetical protein AH10.1 [Caenorhabditis elegans] ref|NP_506502.1| AH10.1 [Caenorhabditis elegans] 0.0
blast CAE71795 Hypothetical protein CBG18805 [Caenorhabditis briggsae] 0.0
blast AAB93427 Hypothetical protein ZK1127.2 [Caenorhabditis elegans] ref|NP_495450.1| ZK1127.2 [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 1.0E-154
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 3.1E-94
Sequence
Target Sequence 
>C. ELEGANS:191649_AT
ttggtcagctgtgcttccgaggacctaccataatgaaggggtacttgaaaaaggaagaat
ctgacattatcgataaggatggattcttgaaaactggcgatttgggttcagtggatcaga
agggtcgtgtccacgtcaccggtcgtatcaaagagctcatcaaggtcaatggaatgcaag
ttccacctgtcgagattgaagatgtcctcctgttgcacccgaaggttaaggattgtgcgg
taattgggatcccggacgagcagaagggcgagtccccgagagcttatatcgtgaagaagg
accatactcttactgaagccgagctctcggattttgttcataaaatgctctcttcgtaca
aatggattgacacctatgagtttatcgatgcgattccgaagcttccgtcggggaagattc
agagaaagaagctgaaggagatggccgctggcggaggatctacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGTCAGCTGTGCTTCCGAGGACC 389 707 1187 Antisense
GGATCAGAAGGGTCGTGTCCACGTC 393 511 1299 Antisense
GTCACCGGTCGTATCAAAGAGCTCA 219 465 1321 Antisense
TGCAAGTTCCACCTGTCGAGATTGA 95 575 1361 Antisense
AGATTGAAGATGTCCTCCTGTTGCA 501 65 1379 Antisense
GAGTCCCCGAGAGCTTATATCGTGA 706 399 1456 Antisense
ATACTCTTACTGAAGCCGAGCTCTC 40 25 1490 Antisense
CCGAGCTCTCGGATTTTGTTCATAA 685 263 1505 Antisense
AAATGCTCTCTTCGTACAAATGGAT 456 119 1529 Antisense
ATCGATGCGATTCCGAAGCTTCCGT 38 37 1570 Antisense
GATGGCCGCTGGCGGAGGATCTACG 94 407 1626 Antisense
Sequence Source Affymetrix Proprietary Database