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[191648_at] ATP synthase epsilion chain

Description F32D1.2 /REP_DB=WormBase Gene ID /WP=CE09866 /TR=O16298 /GB=AAB65352.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATP synthase epsilion chain
Cluster 6grp_highest_10_10 > 24      6grp_high1_10_10 > 41      4grp_highest_8_8 > 09      4grp_high_8_8 > 61      6grp_highest_nonorm > 07      6grp_total > 31      4grp_total > 58      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10271
1 2 3 4 range
A 11364.9
(-0.5)
P 		16471
(3)
P 		16183.7
(2.8)
P 		7800.3
(-3)
P 		8671
B 12136.7
(-0.1)
P 		14900.1
(1.6)
P 		17252.9
(3)
P 		7495.4
(-3)
P 		9758
C 11798.1
(0.7)
P 		14765.5
(3)
P 		14812.3
(3)
P 		6981.6
(-3)
P 		7831
avr 11766.6
(0) 		15378.9
(2.5) 		16083
(3) 		7425.8
(-3) 		8657

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7114
1 2 3 4 5 6 range
A 12073.8
(-0.3)
P 		12950.2
(0.5)
P 		15832.4
(3)
P 		13232.6
(0.7)
P 		10075.6
(-2)
P 		8978.2
(-3)
P 		6854
B 11661.8
(-0.7)
P 		13937.3
(1.2)
P 		16092.3
(3)
P 		11716.8
(-0.7)
P 		10809.9
(-1.5)
P 		8991.2
(-3)
P 		7101
C 11686.9
(0.2)
P 		13291.1
(2.6)
P 		13530.3
(3)
P 		12448.7
(1.4)
P 		10366.4
(-1.7)
P 		9521.8
(-3)
P 		4009
avr 11807.5
(-0.4) 		13392.9
(1.2) 		15151.7
(3) 		12466
(0.3) 		10417.3
(-1.7) 		9163.7
(-3) 		5988
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4021
1 2 3 4 range
A 4137.9
(2.8)
P 		3575.4
(1.7)
P 		4230.7
(3)
P 		1141.8
(-3)
P 		3089
B 3870.3
(2.7)
P 		3680
(2.2)
P 		3997.9
(3)
P 		1597.3
(-3)
P 		2401
C 3905.5
(1.1)
P 		4245.2
(1.6)
P 		5162.5
(3)
P 		1177.2
(-3)
P 		3985
avr 3971.2
(2.1) 		3833.5
(1.8) 		4463.7
(3) 		1305.4
(-3) 		3158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2453
1 2 3 4 5 6 range
A 2225.7
(-2.9)
P 		4605.7
(3)
P 		3448
(0.1)
P 		3356.1
(-0.1)
P 		3040.4
(-0.9)
P 		2185.9
(-3)
P 		2420
B 4057.7
(0.7)
P 		4639.1
(3)
P 		3907.7
(0.1)
P 		3103.4
(-3)
P 		4391.9
(2)
P 		3352.8
(-2)
P 		1536
C 4331.8
(3)
P 		4055.5
(2.1)
P 		3443.7
(0.1)
P 		2503.4
(-3)
P 		3354.4
(-0.2)
P 		3187.5
(-0.8)
P 		1828
avr 3538.4
(-0.5) 		4433.4
(3) 		3599.8
(-0.3) 		2987.6
(-2.7) 		3595.6
(-0.3) 		2908.7
(-3) 		1525
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191648_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15247
Sequence Type Exemplar sequence
Representative Public ID F32D1.2 NCBI
Target Description F32D1.2 /REP_DB=WormBase Gene ID /WP=CE09866 /TR=O16298 /GB=AAB65352.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=ATP synthase epsilion chain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071797(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071797 NCBI Caenorhabditis elegans F32D1.2 (F32D1.2) mRNA, complete cds. 11/11 None
SNAP00000007311 ENSEMBL cdna:SNAP chromosome:CEL140:V:4341441:4355303:-1 10/11 None
GENEFINDER00000007340 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4346023:4346234:-1 11/11 None
F32D1.2.2 ENSEMBL cdna:known chromosome:CEL140:V:4345902:4346237:-1 gene:F32D1.2 11/11 None
F32D1.2.1 ENSEMBL cdna:known chromosome:CEL140:V:4345902:4346239:-1 gene:F32D1.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4346022-4346234(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATP synthase epsilion chain
Ensembl F32D1.2
Entrez Gene 178830 Entrez gene
SwissProt O16298 EMBL-EBI
WormBase CE09866 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
15986 ATP synthesis coupled proton transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5739 mitochondrion inferred from electronic annotation QuickGO AmiGO
16469 proton-transporting two-sector ATPase complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
46933 hydrogen-transporting ATP synthase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
46961 hydrogen-transporting ATPase activity, rotational mechanism inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65351 Hypothetical protein F32D1.1 [Caenorhabditis elegans] ref|NP_504197.1| F32D1.1 [Caenorhabditis elegans] 0.0
blast AAB65353 Hypothetical protein F32D1.3 [Caenorhabditis elegans] ref|NP_504200.1| F32D1.3 [Caenorhabditis elegans] 0.0
blast CAE74191 Hypothetical protein CBG21866 [Caenorhabditis briggsae] 0.0
blast AAB65352 Hypothetical protein F32D1.2 [Caenorhabditis elegans] ref|NP_504198.1| F32D1.2 [Caenorhabditis elegans] 3.0E-24
blast CAE74192 Hypothetical protein CBG21867 [Caenorhabditis briggsae] 8.0E-20
Protein Domains
Database ID Description E-Value
Pfam IPR006721 EMBL-EBI Mitochondrial ATP synthase epsilon chain 7.6E-22
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.3E-78
Pfam IPR006721 EMBL-EBI Mitochondrial ATP synthase epsilon chain 9.2E-16
Pfam IPR001440 EMBL-EBI TPR repeat 3.3E-5
Pfam IPR001440 EMBL-EBI TPR repeat 0.1
Pfam IPR001440 EMBL-EBI TPR repeat 0.0019
Pfam IPR001440 EMBL-EBI TPR repeat 1.9E-6
Pfam IPR001440 EMBL-EBI TPR repeat 0.076
Pfam IPR001440 EMBL-EBI TPR repeat 4.7E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000007311 5 21-43,58-77,98-117,140-162,174-196
Sequence
Target Sequence 
>C. ELEGANS:191648_AT
tggactcaactacgtgcgttactcgcaaatcgctgccgagatcacccgcaagtgcaccaa
gcaagtcggaggaaaggccgctgttaagaagccagaggcaactctcaagatcacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTCAACTACGTGCGTTACTCG 320 547 33 Antisense
ACTCAACTACGTGCGTTACTCGCAA 566 99 36 Antisense
CGTGCGTTACTCGCAAATCGCTGCC 381 245 45 Antisense
GTTACTCGCAAATCGCTGCCGAGAT 48 447 50 Antisense
CTCGCAAATCGCTGCCGAGATCACC 458 233 54 Antisense
CCCGCAAGTGCACCAAGCAAGTCGG 81 261 77 Antisense
GTGCACCAAGCAAGTCGGAGGAAAG 455 479 84 Antisense
GCAAGTCGGAGGAAAGGCCGCTGTT 250 321 93 Antisense
GGAAAGGCCGCTGTTAAGAAGCCAG 627 509 103 Antisense
GGCCGCTGTTAAGAAGCCAGAGGCA 389 543 108 Antisense
GCCAGAGGCAACTCTCAAGATCACC 150 281 123 Antisense
Sequence Source Affymetrix Proprietary Database