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[191647_at] 7TM chemoreceptor, srh family

Description C31B8.13 /REP_DB=WormBase Gene ID /WP=CE08493 /GEN=srh-247 /TR=O16909 /GB=AAG23979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 4grp_high_8_8 > 22      6grp_total > 28      4grp_total > 34      6grp_cgc > 01      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 99
1 2 3 4 range
A 14.2
(-3)
A 		93.1
(3)
A 		26.7
(-2)
A 		52.5
(-0.1)
M 		79
B 39.3
(-1.2)
P 		61.5
(3)
P 		53.3
(1.4)
P 		29.8
(-3)
M 		32
C 30.5
(-3)
P 		37.1
(-2.5)
A 		41.8
(-2.2)
M 		112.9
(3)
P 		82
avr 28
(-3) 		63.9
(2.8) 		40.6
(-1) 		65.1
(3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 95.9
(3)
M 		24.2
(-3)
M 		43.8
(-1.4)
P 		35.8
(-2)
A 		57
(-0.3)
P 		50.1
(-0.8)
P 		72
B 25.8
(-2.9)
A 		38.4
(1.1)
A 		33.5
(-0.5)
A 		25.5
(-3)
A 		38.1
(1)
A 		44.6
(3)
A 		19
C 59.3
(3)
P 		58.2
(2.8)
A 		28.6
(-2.6)
A 		44.4
(0.3)
A 		30.9
(-2.1)
A 		26.2
(-3)
A 		33
avr 60.3
(3) 		40.3
(-1.8) 		35.3
(-3) 		35.2
(-3) 		42
(-1.4) 		40.3
(-1.8) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 5.2
(-3)
A 		20.2
(3)
A 		7
(-2.3)
A 		7.7
(-2)
M 		15
B 12.5
(1.2)
P 		15.2
(3)
P 		12.3
(1)
P 		6.4
(-3)
M 		9
C 10.1
(-3)
P 		10.7
(-2.6)
A 		14.6
(0)
M 		19
(3)
P 		9
avr 9.3
(-3) 		15.4
(3) 		11.3
(-1) 		11
(-1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 17.7
(3)
M 		8.6
(-3)
M 		9.5
(-2.4)
P 		9.1
(-2.7)
A 		17.2
(2.7)
P 		12.2
(-0.6)
P 		9
B 9
(-1.7)
A 		12.8
(0.7)
A 		8.1
(-2.2)
A 		6.8
(-3)
A 		15.5
(2.3)
A 		16.6
(3)
A 		10
C 22
(3)
P 		17.8
(1.3)
A 		7.3
(-3)
A 		8.9
(-2.3)
A 		10
(-1.9)
A 		8.8
(-2.4)
A 		15
avr 16.2
(3) 		13.1
(0.6) 		8.3
(-3) 		8.3
(-3) 		14.2
(1.5) 		12.5
(0.2) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191647_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15269
Sequence Type Exemplar sequence
Representative Public ID C31B8.13 NCBI
Target Description C31B8.13 /REP_DB=WormBase Gene ID /WP=CE08493 /GEN=srh-247 /TR=O16909 /GB=AAG23979.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071395 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-247) (srh-247) mRNA, complete cds. 11/11 None
C31B8.13 ENSEMBL cdna:known chromosome:CEL140:V:2932970:2934002:-1 gene:C31B8.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2932969-2934002(-) 98.57 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-247
Ensembl C31B8.13
Entrez Gene 191894 Entrez gene
SwissProt O16909 EMBL-EBI
WormBase CE08493 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503796 Serpentine Receptor, class H family member (srh-247) [Caenorhabditis elegans] gb|AAG23979.1| Serpentine receptor, class h protein 247 [Caenorhabditis elegans] 0.0
blast AAC17763 Serpentine receptor, class h protein 248 [Caenorhabditis elegans] ref|NP_503803.1| Serpentine Receptor, class H family member (srh-248) [Caenorhabditis elegans] 1.0E-133
blast AAC71178 Serpentine receptor, class h protein 250 [Caenorhabditis elegans] ref|NP_494681.1| Serpentine Receptor, class H family member (srh-250) [Caenorhabditis elegans] 3.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503796.1 7 15-37,56-78,93-112,133-152,192-214,244-266,271-293
C31B8.13 7 15-37,56-78,93-112,133-152,192-214,244-266,271-293
Sequence
Target Sequence 
>C. ELEGANS:191647_AT
tgtaccattattttttctaccgccatttttgcaaattccggatcaagaaattgctcgtct
ctatgttcaaaaagaaattccgtgtctgaacttgacttctgtgcaagatagggagctgtt
cgtgctgtctatgaactccaacttacctggatattgcgttattattggaacatttgctat
aattggctcaactggaataatttttcttctcacactttatcaactcttcaaaagaaacaa
atcgtttaaactgtcttcgaggagctatcaacttcaaaaaaactttttgatcgccataac
tttacaatcgtttttatcatttatcttcatcattgttccagttaatattatcctgtacgt
agtggttttttggtattataatcaagttctcaacaatataatgtgcttaatgttttcaat
gtttggcttggaaacttgtgttgttatgattttagtgcacaaaccttacagggaatttgc
catatctttgatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTACCATTATTTTTTCTACCGCCA 31 561 435 Antisense
CTACCGCCATTTTTGCAAATTCCGG 560 225 451 Antisense
GAAATTGCTCGTCTCTATGTTCAAA 482 363 481 Antisense
CCGTGTCTGAACTTGACTTCTGTGC 651 263 514 Antisense
GATAGGGAGCTGTTCGTGCTGTCTA 467 425 541 Antisense
GCTGTCTATGAACTCCAACTTACCT 646 295 558 Antisense
GAATAATTTTTCTTCTCACACTTTA 48 327 629 Antisense
AACTGTCTTCGAGGAGCTATCAACT 117 143 683 Antisense
ACTTTTTGATCGCCATAACTTTACA 107 103 716 Antisense
TTATCATTTATCTTCATCATTGTTC 79 681 748 Antisense
GGGAATTTGCCATATCTTTGATACT 564 493 905 Antisense
Sequence Source Affymetrix Proprietary Database