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[191645_at] fibronectin type-III repeats

Description C27B7.7 /REP_DB=WormBase Gene ID /WP=CE03036 /TR=Q18245 /GB=CAA90982.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=fibronectin type-III repeats
Cluster 6grp_total > 01      4grp_total > 06      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 123.1
(-0.2)
A 		72.2
(-3)
A 		89.8
(-2)
A 		179.5
(3)
A 		107
B 87.1
(0.3)
A 		11.6
(-3)
A 		59.3
(-0.9)
A 		149.4
(3)
A 		138
C 139
(-0.1)
A 		61.6
(-3)
A 		77.2
(-2.4)
A 		221.7
(3)
A 		160
avr 116.4
(0) 		48.5
(-3) 		75.4
(-1.8) 		183.5
(3) 		135

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 119.1
(2.6)
A 		122.4
(3)
A 		82.3
(-1.4)
A 		67.8
(-3)
A 		85.5
(-1.1)
A 		77
(-2)
A 		55
B 131.9
(-0.6)
A 		216.6
(3)
A 		161.8
(0.7)
A 		73.9
(-3)
A 		120.8
(-1)
A 		106.2
(-1.6)
A 		143
C 135.1
(1.2)
A 		170.8
(3)
A 		85.1
(-1.4)
A 		53.2
(-3)
A 		66.9
(-2.3)
A 		87.4
(-1.3)
A 		118
avr 128.7
(0.6) 		169.9
(3) 		109.7
(-0.4) 		65
(-3) 		91.1
(-1.5) 		90.2
(-1.6) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 44.8
(3)
A 		15.7
(-3)
A 		23.5
(-1.4)
A 		26.3
(-0.8)
A 		29
B 27.8
(2.2)
A 		2.9
(-3)
A 		13.7
(-0.8)
A 		31.8
(3)
A 		29
C 46
(3)
A 		17.7
(-3)
A 		26.9
(-1)
A 		37.4
(1.2)
A 		28
avr 39.5
(3) 		12.1
(-3) 		21.4
(-1) 		31.8
(1.3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 22
(-1.9)
A 		43.5
(3)
A 		17.9
(-2.8)
A 		17.2
(-3)
A 		25.8
(-1)
A 		18.7
(-2.7)
A 		26
B 45.9
(0)
A 		72.1
(3)
A 		39.3
(-0.7)
A 		19.6
(-3)
A 		49.1
(0.4)
A 		39.6
(-0.7)
A 		53
C 50.1
(2.7)
A 		52.1
(3)
A 		21.7
(-1.4)
A 		10.7
(-3)
A 		21.7
(-1.4)
A 		29.3
(-0.3)
A 		41
avr 39.3
(0.5) 		55.9
(3) 		26.3
(-1.4) 		15.8
(-3) 		32.2
(-0.5) 		29.2
(-1) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191645_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9647
Sequence Type Exemplar sequence
Representative Public ID C27B7.7 NCBI
Target Description C27B7.7 /REP_DB=WormBase Gene ID /WP=CE03036 /TR=Q18245 /GB=CAA90982.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=fibronectin type-III repeats
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069147(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069147 NCBI Caenorhabditis elegans C27B7.7 (C27B7.7) mRNA, complete cds. 11/11 None
SNAP00000019245 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8907031:8915218:1 10/11 None
GENEFINDER00000019250 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8907031:8915218:1 11/11 None
C27B7.7 ENSEMBL cdna:known chromosome:CEL140:IV:8907149:8915365:1 gene:C27B7.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8907154-8915224(+) 100.0 100.0
Public Domain and Genome References
Gene Title fibronectin type-III repeats
Ensembl C27B7.7
Entrez Gene 177708 Entrez gene
SwissProt Q18245 EMBL-EBI
WormBase CE03036 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90982 Hypothetical protein C27B7.7 [Caenorhabditis elegans] ref|NP_501548.1| C27B7.7 [Caenorhabditis elegans] 0.0
blast CAE70109 Hypothetical protein CBG16558 [Caenorhabditis briggsae] 2.0E-75
blast CAE70109 Hypothetical protein CBG16558 [Caenorhabditis briggsae] 2.0E-63
blast AAM48546 Hypothetical protein K07E12.1b [Caenorhabditis elegans] ref|NP_001022668.1| K07E12.1b [Caenorhabditis elegans] 7.0E-62
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.2E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.7E-8
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.0E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 5.2E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.0E-7
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.7E-11
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.7E-8
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.0E-5
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.3E-10
Pfam IPR003961 EMBL-EBI Fibronectin, type III 4.0E-5
Sequence
Target Sequence 
>C. ELEGANS:191645_AT
gtagaaccaagacttccaaacggagagattcaaaattatacaatttatatccaaaaagaa
aatgaatcagaaaatgaagaacatagtattgataaggaatggaagaaattcatttatggc
tcgaatataactcatgtcataattggtgttgatgatggtttagaagaaaatgaaagatat
caaatgaaaatgacagcaacaaatcaaagacatgaaggtcctgagacgaaggtatacact
ttcgatttgatatcctttgacgagaatgacgtcatcgataatttcacagcaattgttatc
aattcaacggtgttcgtcgaagtgggaaatcccatttatacaaagtacaatatttatatt
cgagaagatggaaataatcagactgtcaaacatgaaattgatgtggaaagtggaaagaca
acatttgaatttccatttcagttagatcatacgttgagttatacaatcaaaatgtctgga
atgaagcttggacgtgaaagtcctccatccgaagagattgatcttgaatttataagttca
ccgtctccaactccaataatttccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGAACCAAGACTTCCAAACGGAG 573 435 3826 Antisense
ATGGCTCGAATATAACTCATGTCAT 503 51 3941 Antisense
GGTATACACTTTCGATTTGATATCC 213 505 4056 Antisense
TTTGATATCCTTTGACGAGAATGAC 255 659 4071 Antisense
GTTATCAATTCAACGGTGTTCGTCG 181 447 4120 Antisense
GTGTTCGTCGAAGTGGGAAATCCCA 536 485 4135 Antisense
ATTTCCATTTCAGTTAGATCATACG 479 17 4254 Antisense
GCTTGGACGTGAAAGTCCTCCATCC 65 307 4311 Antisense
AGTCCTCCATCCGAAGAGATTGATC 252 61 4324 Antisense
GAATTTATAAGTTCACCGTCTCCAA 231 325 4351 Antisense
CCGTCTCCAACTCCAATAATTTCCG 290 265 4366 Antisense
Sequence Source Affymetrix Proprietary Database