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[191643_at] ser/thr-protein phosphatase

Description F42G8.8 /REP_DB=WormBase Gene ID /WP=CE17067 /TR=O44507 /GB=AAB92072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr-protein phosphatase
Cluster 6grp_total > 78      4grp_total > 0      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 8.2
(-2.9)
A 		10.6
(-2.5)
A 		7.9
(-3)
A 		37.4
(3)
A 		30
B 22.1
(3)
A 		19.4
(1.9)
A 		7.6
(-3)
A 		14.3
(-0.2)
A 		15
C 9
(-2.1)
A 		5.1
(-3)
A 		31.1
(3)
A 		11.6
(-1.5)
A 		26
avr 13.1
(-2.1) 		11.7
(-3) 		15.5
(-0.6) 		21.1
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 5.4
(-2.8)
A 		2.5
(-3)
A 		5.9
(-2.7)
A 		11.7
(-2.2)
A 		4.9
(-2.8)
A 		74
(3)
P 		72
B 17.1
(-2.1)
A 		21.7
(-1.5)
A 		10.6
(-3)
A 		10.4
(-3)
A 		40.4
(1.1)
A 		54.6
(3)
A 		44
C 27
(-1.6)
A 		2.6
(-3)
A 		5.1
(-2.9)
A 		8.8
(-2.6)
A 		48.2
(-0.3)
A 		105.3
(3)
P 		103
avr 16.5
(-2.2) 		8.9
(-2.9) 		7.2
(-3) 		10.3
(-2.7) 		31.2
(-1) 		78
(3) 		71
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 3
(-1.4)
A 		2.3
(-2.6)
A 		2.1
(-3)
A 		5.5
(3)
A 		3
B 7
(3)
A 		4.8
(0.5)
A 		1.8
(-3)
A 		3
(-1.6)
A 		5
C 3
(-2)
A 		1.5
(-3)
A 		10.8
(3)
A 		1.9
(-2.7)
A 		9
avr 4.3
(1.2) 		2.9
(-3) 		4.9
(3) 		3.5
(-1.2) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 1
(-3)
A 		0.9
(-3)
A 		1.3
(-2.9)
A 		3
(-2.3)
A 		1.5
(-2.8)
A 		18
(3)
P 		17
B 5.9
(-1.9)
A 		7.2
(-1.4)
A 		2.6
(-3)
A 		2.8
(-2.9)
A 		16.4
(1.7)
A 		20.3
(3)
A 		18
C 10
(-1.4)
A 		0.8
(-3)
A 		1.3
(-2.9)
A 		1.8
(-2.8)
A 		15.6
(-0.4)
A 		35.3
(3)
P 		35
avr 5.6
(-2) 		3
(-2.7) 		1.7
(-3) 		2.5
(-2.8) 		11.2
(-0.5) 		24.5
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191643_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8883
Sequence Type Exemplar sequence
Representative Public ID F42G8.8 NCBI
Target Description F42G8.8 /REP_DB=WormBase Gene ID /WP=CE17067 /TR=O44507 /GB=AAB92072.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=ser-thr-protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068955(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068955 NCBI Caenorhabditis elegans F42G8.8 (F42G8.8) mRNA, complete cds. 11/11 None
SNAP00000028271 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8119182:8121318:1 10/11 None
GENEFINDER00000028287 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8116214:8121318:1 10/11 None
F42G8.8 ENSEMBL cdna:known chromosome:CEL140:IV:8119182:8122221:1 gene:F42G8.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028272 1/11 Cross Hyb Matching Probes None
GENEFINDER00000028288 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8119187-8122227(+) 100.0 100.0
Public Domain and Genome References
Gene Title ser/thr-protein phosphatase
Ensembl F42G8.8
Entrez Gene 185677 Entrez gene
SwissProt O44507 EMBL-EBI
WormBase CE17067 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 0.0
blast AAB92068 Hypothetical protein F42G8.9 [Caenorhabditis elegans] ref|NP_501355.2| F42G8.9 [Caenorhabditis elegans] 0.0
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-147
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-146
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-134
blast CAE67160 Hypothetical protein CBG12586 [Caenorhabditis briggsae] 1.0E-123
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.8E-36
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.8E-36
Sequence
Target Sequence 
>C. ELEGANS:191643_AT
ttgccgaccaaaaacttcttacgattttctcggctccacgatacatgaatgaaactgata
atcatggtgcgacgttgaaagtcgagacgaacgggcgcttgtccattggtcgcttgagaa
atatgaaggctcttcatcccaacgtagcagctgacgaaatcactcgtggggatgatatgc
catctggcgcaaaggttgcaaagaaaaagtccaactcaatgactgtgtcagcttctaaat
cgtcgtcgtcctcgaattctcatggcaaaggcaagaacaaaaaaatgccagctcttataa
ctgatatccttatctcaatggatgatcgtttcctgtatatctccttttggcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCCGACCAAAAACTTCTTACGAT 448 699 860 Antisense
ATTTTCTCGGCTCCACGATACATGA 346 15 883 Antisense
AAGTCGAGACGAACGGGCGCTTGTC 130 157 938 Antisense
CGCTTGTCCATTGGTCGCTTGAGAA 657 253 955 Antisense
CTTCATCCCAACGTAGCAGCTGACG 95 221 991 Antisense
GCAGCTGACGAAATCACTCGTGGGG 1 315 1006 Antisense
ATGCCATCTGGCGCAAAGGTTGCAA 362 41 1036 Antisense
AGTCCAACTCAATGACTGTGTCAGC 278 61 1067 Antisense
CTGTGTCAGCTTCTAAATCGTCGTC 3 241 1082 Antisense
GTCGTCCTCGAATTCTCATGGCAAA 461 473 1104 Antisense
TTCCTGTATATCTCCTTTTGGCTTC 674 697 1189 Antisense
Sequence Source Affymetrix Proprietary Database