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[191642_s_at] protein-tyrosine phosphatase

Description K07F5.8 /REP_DB=WormBase Gene ID /WP=CE23859 /TR=Q21297 /GB=CAA94284.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_total > 69      4grp_total > 20      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 38.4
(-0.1)
A 		40.3
(0.1)
A 		6.1
(-3)
A 		73.1
(3)
A 		67
B 33.2
(3)
A 		23.3
(-3)
A 		26.9
(-0.8)
A 		29.6
(0.8)
A 		10
C 46.8
(-1.6)
P 		52.7
(-1.1)
M 		32.7
(-3)
P 		94.5
(3)
P 		62
avr 39.5
(-0.6) 		38.8
(-0.7) 		21.9
(-3) 		65.7
(3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 42
1 2 3 4 5 6 range
A 28.2
(-0.2)
A 		13
(-3)
A 		16.7
(-2.3)
A 		36.6
(1.3)
A 		46
(3)
A 		43.7
(2.6)
A 		33
B 44.6
(2.2)
A 		42.4
(1.7)
A 		34.5
(0.1)
M 		31.6
(-0.5)
A 		19.3
(-3)
A 		48.6
(3)
A 		29
C 32.8
(0.1)
M 		53
(3)
A 		12.4
(-2.8)
A 		11
(-3)
A 		41.8
(1.4)
A 		41.7
(1.4)
A 		42
avr 35.2
(0.6) 		36.1
(0.8) 		21.2
(-3) 		26.4
(-1.7) 		35.7
(0.7) 		44.7
(3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 14
(3)
A 		8.8
(0.5)
A 		1.6
(-3)
A 		10.7
(1.4)
A 		12
B 10.6
(3)
A 		5.8
(-3)
A 		6.2
(-2.5)
A 		6.3
(-2.4)
A 		5
C 15.5
(2.5)
P 		15.2
(2.1)
M 		11.4
(-3)
P 		15.9
(3)
P 		5
avr 13.4
(3) 		9.9
(0) 		6.4
(-3) 		11
(0.9) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.2
(-2.1)
A 		4.6
(-2.4)
A 		3.6
(-3)
A 		9.3
(0.3)
A 		13.9
(3)
A 		10.6
(1.1)
A 		10
B 15.5
(1.5)
A 		14.1
(0.7)
A 		8.4
(-2.7)
M 		8.4
(-2.7)
A 		7.8
(-3)
A 		18.1
(3)
A 		10
C 12.1
(1.2)
M 		16.2
(3)
A 		3.2
(-2.6)
A 		2.2
(-3)
A 		13.5
(1.8)
A 		14
(2.1)
A 		14
avr 10.9
(0.8) 		11.6
(1.3) 		5.1
(-3) 		6.6
(-2) 		11.7
(1.4) 		14.2
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191642_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9296
Sequence Type Exemplar sequence
Representative Public ID K07F5.8 NCBI
Target Description K07F5.8 /REP_DB=WormBase Gene ID /WP=CE23859 /TR=Q21297 /GB=CAA94284.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069365(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069365 NCBI Caenorhabditis elegans K07F5.8 (K07F5.8) mRNA, complete cds. 11/11 None
SNAP00000004251 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9848511:9849548:-1 11/11 None
GENEFINDER00000004272 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9847697:9849644:-1 11/11 None
K07F5.8 ENSEMBL cdna:known chromosome:CEL140:IV:9848478:9849672:-1 gene:K07F5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9848516-9849554(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein-tyrosine phosphatase
Ensembl K07F5.8
Entrez Gene 177833 Entrez gene
WormBase CE23859 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4721 phosphoprotein phosphatase activity inferred from electronic annotation QuickGO AmiGO
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94284 Hypothetical protein K07F5.8 [Caenorhabditis elegans] ref|NP_501766.1| K07F5.8 [Caenorhabditis elegans] 1.0E-168
blast CAA94284 Hypothetical protein K07F5.8 [Caenorhabditis elegans] ref|NP_501766.1| K07F5.8 [Caenorhabditis elegans] 1.0E-164
blast CAE66939 Hypothetical protein CBG12331 [Caenorhabditis briggsae] 1.0E-138
blast CAE66939 Hypothetical protein CBG12331 [Caenorhabditis briggsae] 1.0E-137
blast CAE71335 Hypothetical protein CBG18235 [Caenorhabditis briggsae] 1.0E-119
blast CAE71335 Hypothetical protein CBG18235 [Caenorhabditis briggsae] 1.0E-117
Protein Domains
Database ID Description E-Value
scop a.4.5.Replication terminator protein (RTP) All alpha proteins; DNA/RNA-binding 3-helical bundle; "Winged helix" DNA-binding domain; Replication terminator protein (RTP) 7.80000019073486
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.8E-97
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 1.7E-25
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 2.8E-97
Sequence
Target Sequence 
>C. ELEGANS:191642_S_AT
ggatcgcgtcgagacaatcttcatgttgtgcaactataaggagaaaggagcaaagaagtg
tcacgaatatcttccaaccgaggacaacaaggacactatgtcattcaaagaaaaaggaca
gaaagtcaccgtcaaattcgaatcgtcaaaagcgatcaaatttcgggacaacagtgccgc
gaaggttacgaagaccgtgctgacagttgagggagctggttgtgataaacttaaggttaa
tcattaccactggatagattggcctgatcgaggagttccgactgctgacaatgcaattct
cgaactgttggaaaaagccagagtgtcgaaaggaccgattgctgtgcactgctcggcagg
cattgggcgtactggctccgtggtgatgctcgagtacgtgatggatcaattgctagctgg
acagattatcgaagacactgacaagattattcagaaaattcgtgaacagcgtaacaattc
ggttcagaccgatcatcaatacctcttcgtccatcaagttatgatgaatttctttgaaaa
gcgtggacttctcgatgaggccacttctgccattcacaaggattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCGCGTCGAGACAATCTTCATG 379 513 252 Antisense
GTCACGAATATCTTCCAACCGAGGA 664 463 311 Antisense
AGTCACCGTCAAATTCGAATCGTCA 581 61 375 Antisense
GGACAACAGTGCCGCGAAGGTTACG 642 523 417 Antisense
TACGAAGACCGTGCTGACAGTTGAG 317 649 438 Antisense
GATCGAGGAGTTCCGACTGCTGACA 469 417 517 Antisense
CTCCGTGGTGATGCTCGAGTACGTG 375 233 627 Antisense
GACCGATCATCAATACCTCTTCGTC 290 383 738 Antisense
ATACCTCTTCGTCCATCAAGTTATG 287 23 750 Antisense
AAGCGTGGACTTCTCGATGAGGCCA 308 149 790 Antisense
CCACTTCTGCCATTCACAAGGATTT 491 275 812 Antisense
Sequence Source Affymetrix Proprietary Database