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[191641_s_at]

Description C36A4.9 /REP_DB=WormBase Gene ID /WP=CE03076 /TR=Q18496 /GB=CAA91274.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=acetyl-coenzyme A synthetase
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 62      4grp_highest_8_8 > 13      4grp_high_8_8 > 30      6grp_highest_nonorm > 27      6grp_total > 72      4grp_total > 24      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4976
1 2 3 4 range
A 1776.2
(-3)
P 		3572.1
(-0.8)
P 		4224.1
(-0)
P 		6752.6
(3)
P 		4976
B 2150
(-3)
P 		4373.5
(0.2)
P 		4633.4
(0.5)
P 		6380.9
(3)
P 		4231
C 1894.2
(-3)
P 		3901.8
(-0.2)
P 		4311
(0.4)
P 		6179.5
(3)
P 		4285
avr 1940.1
(-3) 		3949.1
(-0.3) 		4389.5
(0.3) 		6437.7
(3) 		4498

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5670
1 2 3 4 5 6 range
A 5003.2
(-3)
P 		7205.7
(0.7)
P 		7622.8
(1.4)
P 		8575.5
(3)
P 		6712.8
(-0.1)
P 		6294.9
(-0.8)
P 		3572
B 4829.1
(-3)
P 		6199.7
(-0.6)
P 		7212.3
(1.2)
P 		8241
(3)
P 		7777.6
(2.2)
P 		4942.9
(-2.8)
P 		3412
C 5084.6
(-3)
P 		6051.2
(-1.9)
P 		10499.4
(3)
P 		7227.7
(-0.6)
P 		8744.2
(1.1)
P 		5184.8
(-2.9)
P 		5415
avr 4972.3
(-3) 		6485.5
(-0.4) 		8444.8
(3) 		8014.7
(2.3) 		7744.9
(1.8) 		5474.2
(-2.1) 		3473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 876
1 2 3 4 range
A 646.7
(-3)
P 		775.4
(-1.3)
P 		1104.3
(3)
P 		988.5
(1.5)
P 		458
B 685.6
(-3)
P 		1080.2
(0.5)
P 		1073.7
(0.5)
P 		1359.8
(3)
P 		674
C 627
(-3)
P 		1121.8
(0.4)
P 		1502.5
(3)
P 		1042
(-0.2)
P 		876
avr 653.1
(-3) 		992.5
(0.5) 		1226.8
(3) 		1130.1
(2) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2238
1 2 3 4 5 6 range
A 922.3
(-3)
P 		2562.7
(3)
P 		1660.1
(-0.3)
P 		2174.9
(1.6)
P 		2025.6
(1)
P 		1532.6
(-0.8)
P 		1640
B 1680.3
(-3)
P 		2063.6
(-1.4)
P 		1751.4
(-2.7)
P 		2182.8
(-1)
P 		3160
(3)
P 		1843.2
(-2.3)
P 		1480
C 1884.6
(-1.1)
P 		1846.4
(-1.3)
P 		2672.3
(2.3)
P 		1453.5
(-3)
P 		2829.5
(3)
P 		1735.6
(-1.8)
P 		1376
avr 1495.7
(-3) 		2157.6
(0.4) 		2027.9
(-0.3) 		1937.1
(-0.7) 		2671.7
(3) 		1703.8
(-1.9) 		1176
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191641_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6537
Sequence Type Exemplar sequence
Representative Public ID C36A4.9 NCBI
Target Description C36A4.9 /REP_DB=WormBase Gene ID /WP=CE03076 /TR=Q18496 /GB=CAA91274.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation /DEF=acetyl-coenzyme A synthetase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026034(11), NM_001026035(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026034 NCBI Caenorhabditis elegans C36A4.9a (C36A4.9) mRNA, complete cds. 11/11 None
NM_001026035 NCBI Caenorhabditis elegans C36A4.9b (C36A4.9) mRNA, complete cds. 11/11 None
SNAP00000028399 ENSEMBL cdna:SNAP chromosome:CEL140:III:3864482:3866807:1 11/11 None
GENEFINDER00000028401 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:3864482:3867618:1 11/11 None
C36A4.9a.2 ENSEMBL cdna:known chromosome:CEL140:III:3864013:3867075:1 gene:C36A4.9 11/11 None
C36A4.9a.3 ENSEMBL cdna:known chromosome:CEL140:III:3864460:3867075:1 gene:C36A4.9 11/11 None
C36A4.9a.4 ENSEMBL cdna:known chromosome:CEL140:III:3864461:3867075:1 gene:C36A4.9 11/11 None
C36A4.9a.1 ENSEMBL cdna:known chromosome:CEL140:III:3864466:3867075:1 gene:C36A4.9 11/11 None
C36A4.9b ENSEMBL cdna:known chromosome:CEL140:III:3864466:3866807:1 gene:C36A4.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3864481-3866807(+) 100.0 100.0
Public Domain and Genome References
Ensembl C36A4.9
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA91274 Hypothetical protein C36A4.9a [Caenorhabditis elegans] ref|NP_001021205.1| C36A4.9a [Caenorhabditis elegans] 0.0
blast CAH19100 Hypothetical protein C36A4.9b [Caenorhabditis elegans] ref|NP_001021206.1| C36A4.9b [Caenorhabditis elegans] 0.0
blast CAE60089 Hypothetical protein CBG03613 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 6.9E-126
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 6.9E-126
Sequence
Target Sequence 
>C. ELEGANS:191641_S_AT
ggagcatctccagttcttttggatgctgaaggtcgtgttattgaaggtccgggagaagga
tcactatgctttgatcgtgcctggcctggaatgatgcgtggaatctatggagatgagcaa
cgctttgtcaagacctatttggctccattcaatggatactatttcactggagatggtgcc
agacgtgatgaagatggatacttgtggataactggacgtgttgatgatttgatgaatgtc
agtggtcatcttctgtctactgctgaaattgaatcagctcttgtggctcatgagaaagtt
gctgaagctgccgttgttgctgctccacatgacatcaagggatccttcccatacgcattc
gtcactttgaatgttggagagagaatcaatgaaaagcttgtggctgagctcaagaaacta
gttcgcgagaaaattggtgcattggctgttccagatgttatccaagaagctccaggactt
ccaaaaactcgttccggcaaggttaccagaagaatcttgagaaagattgctgaaggatcc
gaaagtggaatcggtgatactactactctag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGCATCTCCAGTTCTTTTGGATG 359 521 1432 Antisense
GATCGTGCCTGGCCTGGAATGATGC 461 417 1504 Antisense
GATGAGCAACGCTTTGTCAAGACCT 646 409 1543 Antisense
GTCAAGACCTATTTGGCTCCATTCA 62 465 1558 Antisense
GTCATCTTCTGTCTACTGCTGAAAT 671 467 1676 Antisense
GAATCAGCTCTTGTGGCTCATGAGA 28 329 1702 Antisense
AGTTGCTGAAGCTGCCGTTGTTGCT 350 65 1728 Antisense
TTGCTGCTCCACATGACATCAAGGG 570 701 1748 Antisense
TCAAGGGATCCTTCCCATACGCATT 469 629 1766 Antisense
GGTGCATTGGCTGTTCCAGATGTTA 391 501 1867 Antisense
GGAATCGGTGATACTACTACTCTAG 247 533 1978 Antisense
Sequence Source Affymetrix Proprietary Database