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[191640_at] 7TM chemoreceptor, srh family

Description T21D12.5 /REP_DB=WormBase Gene ID /WP=CE28414 /GEN=srh-282 /TR=O16782 /GB=AAC48092.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 0      4grp_total > 20      6grp_total_sub > Hat      6grp_cgc > 54      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 30.5
(-1.3)
A 		37.5
(-0.9)
A 		4.8
(-3)
A 		96.5
(3)
A 		92
B 8.3
(-2)
A 		34.8
(3)
A 		2.8
(-3)
A 		15
(-0.7)
A 		32
C 54.9
(-0.4)
A 		30.6
(-3)
A 		32.2
(-2.8)
A 		86.1
(3)
A 		56
avr 31.2
(-1) 		34.3
(-0.6) 		13.3
(-3) 		65.9
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 12.2
(-1.4)
A 		39.4
(3)
A 		2.9
(-3)
A 		39
(2.9)
A 		17.8
(-0.5)
A 		2.7
(-3)
A 		37
B 28.5
(-0.2)
A 		48.9
(3)
A 		12.3
(-2.7)
A 		11
(-2.9)
A 		10.4
(-3)
A 		25.2
(-0.7)
A 		39
C 5.9
(-2.7)
A 		39.5
(0.8)
A 		4.5
(-2.8)
A 		3.1
(-3)
A 		2.7
(-3)
A 		60.5
(3)
A 		58
avr 15.5
(-1.5) 		42.6
(3) 		6.6
(-3) 		17.7
(-1.2) 		10.3
(-2.4) 		29.5
(0.8) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 11.1
(1.6)
A 		8.1
(0.2)
A 		1.3
(-3)
A 		14.1
(3)
A 		13
B 2.6
(-1.6)
A 		8.6
(3)
A 		0.7
(-3)
A 		3.2
(-1.1)
A 		8
C 18.2
(3)
A 		8.8
(-3)
A 		11.2
(-1.5)
A 		14.5
(0.6)
A 		9
avr 10.6
(3) 		8.5
(1) 		4.4
(-3) 		10.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.2
(-2.3)
A 		14
(3)
A 		0.6
(-3)
A 		9.9
(1.2)
A 		5.4
(-0.9)
A 		0.7
(-3)
A 		13
B 9.9
(0.1)
A 		16.3
(3)
A 		3
(-3)
A 		2.9
(-3)
A 		4.2
(-2.4)
A 		9.4
(-0.1)
A 		13
C 2.2
(-2.5)
A 		12
(0.5)
A 		1.1
(-2.8)
A 		0.6
(-3)
A 		0.9
(-2.9)
A 		20.2
(3)
A 		20
avr 4.8
(-1.5) 		14.1
(3) 		1.6
(-3) 		4.5
(-1.6) 		3.5
(-2.1) 		10.1
(1.1) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191640_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10973
Sequence Type Exemplar sequence
Representative Public ID T21D12.5 NCBI
Target Description T21D12.5 /REP_DB=WormBase Gene ID /WP=CE28414 /GEN=srh-282 /TR=O16782 /GB=AAC48092.2 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067493(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067493 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-282) (srh-282) mRNA, complete cds. 11/11 None
SNAP00000019188 ENSEMBL cdna:SNAP chromosome:CEL140:IV:272315:273386:-1 10/11 None
T21D12.5 ENSEMBL cdna:known chromosome:CEL140:IV:272315:273386:-1 gene:T21D12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:272314-273416(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-282
Ensembl T21D12.5
Entrez Gene 188692 Entrez gene
SwissProt O16782 EMBL-EBI
WormBase CE36019 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48092 Serpentine receptor, class h protein 282 [Caenorhabditis elegans] ref|NP_499894.2| Serpentine Receptor, class H family member (srh-282) [Caenorhabditis elegans] 1.0E-176
blast AAC48092 Serpentine receptor, class h protein 282 [Caenorhabditis elegans] ref|NP_499894.2| Serpentine Receptor, class H family member (srh-282) [Caenorhabditis elegans] 1.0E-124
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 1.0E-71
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 9.0E-67
blast CAB03967 Hypothetical protein C47A10.2 [Caenorhabditis elegans] ref|NP_507488.1| Serpentine Receptor, class H family member (srh-283) [Caenorhabditis elegans] 6.0E-42
blast CAB03968 Hypothetical protein C47A10.3 [Caenorhabditis elegans] ref|NP_507489.2| Serpentine Receptor, class H family member (srh-284) [Caenorhabditis elegans] 1.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.0E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.1E-32
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.4E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499894.2 7 15-36,49-71,91-113,134-153,197-219,243-265,275-294
T21D12.5 7 15-36,49-71,91-113,134-153,197-219,243-265,275-294
SNAP00000019188 5 15-36,88-107,144-166,173-195,205-224
Sequence
Target Sequence 
>C. ELEGANS:191640_AT
gttattcgagaaccgcttcttcgtgctcttcgcagagaaaacttggtggcggcatgtcag
atacccgttcaaagtgttcaacatcacctttggagtggcattttatcttccaacttatta
tgctatgcctgaccaatatcttccaaggcaacaattatttatggtacatcctgagcttat
tcaatttgattcgcctgaaaatcctatattcgttatggctctcgattttccgtggatccc
agtgtactctcaaagagtttttacgataattataattattgaaatgatagtgttcggaac
attgctacaagtgaatatgaactgggcaattttaataccactactattcgtagttctacc
ttctgcttggttggctataatgggagcatataacatttccgaccaaggcagtggaaattt
agcacgtaatataatctccctacatggtgtttcatct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATTCGAGAACCGCTTCTTCGTG 563 447 375 Antisense
CTTCTTCGTGCTCTTCGCAGAGAAA 487 221 390 Antisense
GGCATGTCAGATACCCGTTCAAAGT 229 537 425 Antisense
GGAGTGGCATTTTATCTTCCAACTT 370 517 466 Antisense
CTTCCAACTTATTATGCTATGCCTG 491 217 481 Antisense
CTATGCCTGACCAATATCTTCCAAG 618 223 497 Antisense
TTATGGCTCTCGATTTTCCGTGGAT 394 681 587 Antisense
GGATCCCAGTGTACTCTCAAAGAGT 60 513 608 Antisense
TTCTACCTTCTGCTTGGTTGGCTAT 493 691 728 Antisense
ATAACATTTCCGACCAAGGCAGTGG 79 25 764 Antisense
AATCTCCCTACATGGTGTTTCATCT 370 169 807 Antisense
Sequence Source Affymetrix Proprietary Database