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[191639_s_at]

Description Y45G12B.1 /REP_DB=WormBase Gene ID /WP=CE21933 /TR=Q9N4Y8 /GB=AAF60575.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=NADH-ubiquinone reductase
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 13      6grp_total > 05      4grp_total > 62      6grp_highest_sub > De      6grp_high1_sub > De      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1774
1 2 3 4 range
A 3621.2
(3)
P 		2856.6
(-1.5)
P 		3046.6
(-0.4)
P 		2594.6
(-3)
P 		1027
B 3707.2
(3)
P 		2920.1
(-2.2)
P 		3169.9
(-0.5)
P 		2798.1
(-3)
P 		909
C 3171.6
(3)
P 		2867.8
(1.5)
P 		3141.5
(2.9)
P 		1933.7
(-3)
P 		1238
avr 3500
(3) 		2881.5
(-0.5) 		3119.3
(0.8) 		2442.1
(-3) 		1058

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2818
1 2 3 4 5 6 range
A 3533
(3)
P 		3065.1
(1)
P 		2143.5
(-3)
P 		2273.2
(-2.4)
P 		2271.5
(-2.4)
P 		2197
(-2.8)
P 		1390
B 3256.1
(2.4)
P 		3396.4
(3)
P 		2478.4
(-0.7)
P 		2503
(-0.6)
P 		2395.8
(-1)
P 		1896.4
(-3)
P 		1500
C 4223.9
(3)
P 		3045.8
(0.5)
P 		2941
(0.3)
P 		2450.3
(-0.8)
P 		2628.7
(-0.4)
P 		1406.2
(-3)
P 		2818
avr 3671
(3) 		3169.1
(1.4) 		2521
(-0.8) 		2408.8
(-1.1) 		2432
(-1) 		1833.2
(-3) 		1838
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 992
1 2 3 4 range
A 1318.5
(3)
P 		620.1
(-1.5)
P 		796.4
(-0.3)
P 		379.8
(-3)
P 		939
B 1182.2
(3)
P 		721.2
(-1.7)
P 		734.5
(-1.6)
P 		596.3
(-3)
P 		586
C 1049.9
(2.6)
P 		824.5
(0.9)
P 		1094.9
(3)
P 		326.1
(-3)
P 		769
avr 1183.5
(3) 		721.9
(-0.7) 		875.3
(0.5) 		434.1
(-3) 		749

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1099
1 2 3 4 5 6 range
A 651.3
(-1.2)
P 		1090.1
(3)
P 		466.8
(-3)
P 		576.5
(-1.9)
P 		685.4
(-0.9)
P 		534.9
(-2.3)
P 		623
B 1133
(3)
P 		1130.5
(3)
P 		601.8
(-3)
P 		663
(-2.3)
P 		973.4
(1.2)
P 		707.2
(-1.8)
P 		531
C 1565.6
(3)
P 		929.4
(-0.5)
P 		748.5
(-1.5)
P 		492.8
(-2.9)
P 		850.6
(-0.9)
P 		470.7
(-3)
P 		1095
avr 1116.6
(3) 		1050
(2.3) 		605.7
(-2.6) 		577.4
(-2.9) 		836.5
(-0.1) 		570.9
(-3) 		546
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191639_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15287
Sequence Type Exemplar sequence
Representative Public ID Y45G12B.1 NCBI
Target Description Y45G12B.1 /REP_DB=WormBase Gene ID /WP=CE21933 /TR=Q9N4Y8 /GB=AAF60575.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=NADH-ubiquinone reductase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071332(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071332 NCBI Caenorhabditis elegans Y45G12B.1a (Y45G12B.1) mRNA, complete cds. 11/11 A 
Y45G12B.1a ENSEMBL cdna:known chromosome:CEL140:V:2698805:2706851:1 gene:Y45G12B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000038292 1/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
178735 3 1 NM_071332 175200_s_at (11), 191639_s_at (11)
NM_182321 175200_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2698804-2706563(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y45G12B.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60575 Hypothetical protein Y45G12B.1a [Caenorhabditis elegans] ref|NP_503733.1| Y45G12B.1a [Caenorhabditis elegans] 0.0
blast CAE62536 Hypothetical protein CBG06645 [Caenorhabditis briggsae] 0.0
blast AAO25977 Hypothetical protein Y45G12B.1c [Caenorhabditis elegans] ref|NP_872121.1| Y45G12B.1c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001041 EMBL-EBI Ferredoxin 9.8E-12
Pfam IPR006656 EMBL-EBI Molybdopterin oxidoreductase 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191639_S_AT
accaggagatgcccgtgtcgattggaaaattattcgagccgtttctgaggtttccggcaa
atcgctgccatacagtgatttgaaggagattagacagcgattgaatgagatcgctcccca
cctcgtccgctaccgcgacctcgaagcctctccattcgtcaaacaggctcttcagctggc
acaacccaccggctcaatcgacgttgacgtctccccagtgctccgtgagctctccgacta
ctaccagacgaatgtgatttcacgctactcgcgcagtatggctcaggctcgcaaggccgc
catcgagaataagac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGGAGATGCCCGTGTCGATTGG 183 87 1848 Antisense
GAGATGCCCGTGTCGATTGGAAAAT 609 395 1853 Antisense
TATTCGAGCCGTTTCTGAGGTTTCC 285 661 1878 Antisense
TGAGGTTTCCGGCAAATCGCTGCCA 269 559 1893 Antisense
GGCAAATCGCTGCCATACAGTGATT 251 529 1903 Antisense
AAGCCTCTCCATTCGTCAAACAGGC 39 149 1991 Antisense
GTCAAACAGGCTCTTCAGCTGGCAC 630 463 2005 Antisense
GCTCAATCGACGTTGACGTCTCCCC 556 299 2039 Antisense
CTCCGACTACTACCAGACGAATGTG 75 235 2079 Antisense
GAATGTGATTTCACGCTACTCGCGC 299 333 2097 Antisense
GCAAGGCCGCCATCGAGAATAAGAC 460 321 2138 Antisense
Sequence Source Affymetrix Proprietary Database