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[191637_at] Protein-tyrosine phosphatase

Description F48F5.1 /REP_DB=WormBase Gene ID /WP=CE18707 /TR=Q9XV10 /GB=CAB04411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster 6grp_total > 01      4grp_total > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.2
(-3)
A 		6.5
(-2.8)
A 		15.5
(2.4)
A 		16.6
(3)
A 		10
B 10
(3)
A 		6.5
(-1.5)
A 		5.8
(-2.4)
A 		5.3
(-3)
A 		5
C 9.1
(-2.5)
A 		8.7
(-3)
A 		11.1
(0)
A 		13.5
(3)
A 		5
avr 8.4
(-1.4) 		7.2
(-3) 		10.8
(1.7) 		11.8
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 15.7
(2.9)
A 		15.9
(3)
A 		4.9
(-3)
A 		5.9
(-2.5)
A 		6.5
(-2.1)
A 		6
(-2.4)
A 		11
B 7.1
(-3)
A 		9.4
(-1.1)
A 		9.1
(-1.4)
A 		14.4
(3)
A 		13.4
(2.2)
A 		11.1
(0.3)
A 		7
C 6.1
(-1.8)
A 		12.7
(2)
A 		4.1
(-3)
A 		7.7
(-0.9)
A 		5.8
(-2)
A 		14.4
(3)
A 		10
avr 9.6
(0.2) 		12.7
(3) 		6
(-3) 		9.3
(-0) 		8.6
(-0.7) 		10.5
(1) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 2.3
(-1)
A 		1.4
(-3)
A 		4.1
(3)
A 		2.4
(-0.8)
A 		3
B 3.2
(3)
A 		1.6
(-1.6)
A 		1.4
(-2.1)
A 		1.1
(-3)
A 		2
C 3
(-0.4)
A 		2.5
(-2.3)
A 		3.9
(3)
A 		2.3
(-3)
A 		2
avr 2.8
(1.6) 		1.8
(-3) 		3.1
(3) 		1.9
(-2.5) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 2.9
(-0.7)
A 		5.7
(3)
A 		1.1
(-3)
A 		1.5
(-2.5)
A 		2
(-1.8)
A 		1.5
(-2.5)
A 		5
B 2.5
(-2.5)
A 		3.1
(-1.4)
A 		2.2
(-3)
A 		3.8
(-0.1)
A 		5.5
(3)
A 		4.2
(0.6)
A 		3
C 2.3
(-1.1)
A 		3.9
(1.5)
A 		1.1
(-3)
A 		1.6
(-2.2)
A 		1.9
(-1.7)
A 		4.8
(3)
A 		4
avr 2.6
(-0.6) 		4.2
(3) 		1.5
(-3) 		2.3
(-1.2) 		3.1
(0.6) 		3.5
(1.4) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191637_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12650
Sequence Type Exemplar sequence
Representative Public ID F48F5.1 NCBI
Target Description F48F5.1 /REP_DB=WormBase Gene ID /WP=CE18707 /TR=Q9XV10 /GB=CAB04411.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075531(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075531 NCBI Caenorhabditis elegans F48F5.1 (F48F5.1) mRNA, complete cds. 11/11 None
SNAP00000024989 ENSEMBL cdna:SNAP chromosome:CEL140:V:20438283:20445459:-1 11/11 None
GENEFINDER00000024993 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20438283:20445712:-1 11/11 None
F48F5.1 ENSEMBL cdna:known chromosome:CEL140:V:20438243:20442499:-1 gene:F48F5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20438282-20442499(-) 100.0 100.0
Public Domain and Genome References
Gene Title Protein-tyrosine phosphatase
Ensembl F48F5.1
Entrez Gene 185985 Entrez gene
SwissProt Q9XV10 EMBL-EBI
WormBase CE18707 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB04411 Hypothetical protein F48F5.1 [Caenorhabditis elegans] ref|NP_507932.1| F48F5.1 [Caenorhabditis elegans] 0.0
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 0.0
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 3.0
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.40000009536743
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 2.20000004768372
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.6E-80
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 6.6E-12
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.6E-80
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.9E-8
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.6E-80
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507932.1 1 755-777
F48F5.1 1 755-777
SNAP00000024989 1 960-982
GENEFINDER00000024993 2 34-56,1017-1039
Sequence
Target Sequence 
>C. ELEGANS:191637_AT
tcagcatcaccacagtgtcggttgagaagattttgcacaattcgacggagaagcgcgttc
tgaaagtggtcgacaagaccggaaagtttcccacgagaaatgtcgaacactacctctatt
tgaattggccggataaaaatgttccggaaggacacgatgacactttcgagttgatgaatc
ttgtcaaaaagagcacgaagcctattgtcgtccactgctctgcgggaattggtcgcacca
tgtcattcatcggctccgagtacctcgccagagagattgaacaccatccggacactacgc
tgggcaagaacatggagaatatgcgtgaattccgcagcaagggaattcagactccccagc
agttgtattggatggagatgggcgcaatctacagattgagcaaggagttcaaatttgata
tggccgaatacgtggaacagatgaagatgtatgccaaggctgacgaagtgatggggatgc
ttcagcagtactttgataaggaaggagcatatttgaacgcggttgacaataaaaaagaga
aactcgctgccaaaattcaggtcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCATCACCACAGTGTCGGTTGA 173 623 3275 Antisense
GAAGCGCGTTCTGAAAGTGGTCGAC 249 343 3324 Antisense
ATGTCGAACACTACCTCTATTTGAA 431 47 3374 Antisense
TCCACTGCTCTGCGGGAATTGGTCG 352 589 3485 Antisense
GAATTGGTCGCACCATGTCATTCAT 650 321 3500 Antisense
TGTCATTCATCGGCTCCGAGTACCT 104 559 3515 Antisense
TCCGAGTACCTCGCCAGAGAGATTG 96 595 3529 Antisense
GAGAGATTGAACACCATCCGGACAC 526 395 3545 Antisense
CGGACACTACGCTGGGCAAGAACAT 472 241 3563 Antisense
TCAGACTCCCCAGCAGTTGTATTGG 648 623 3621 Antisense
AACTCGCTGCCAAAATTCAGGTCCA 628 141 3815 Antisense
Sequence Source Affymetrix Proprietary Database