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[191636_at] 7TM chemoreceptor, str family

Description K02H11.7 /REP_DB=WormBase Gene ID /WP=CE18004 /GEN=str-243 /TR=O61982 /GB=AAC17786.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 03      4grp_total > 15      6grp_cgc > 50      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 38.4
(-0.5)
A 		3.7
(-3)
A 		17.6
(-2)
A 		87.8
(3)
A 		84
B 57.6
(3)
A 		10.7
(-3)
A 		35.6
(0.2)
A 		15.3
(-2.4)
A 		47
C 37
(-0.5)
A 		69.1
(3)
A 		47.5
(0.7)
A 		13.6
(-3)
A 		56
avr 44.3
(3) 		27.8
(-3) 		33.6
(-0.9) 		38.9
(1) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 50.4
(2)
A 		45.1
(1.4)
A 		22.2
(-1.1)
A 		59.5
(3)
A 		28.2
(-0.5)
A 		5.5
(-3)
A 		54
B 29.3
(0.1)
A 		35.4
(1)
A 		50.2
(3)
A 		47.4
(2.6)
A 		6.4
(-3)
A 		13.3
(-2.1)
A 		44
C 45.7
(3)
A 		31
(0.8)
A 		5.1
(-3)
A 		42.6
(2.5)
A 		32.5
(1)
A 		22
(-0.5)
A 		41
avr 41.8
(1.7) 		37.2
(0.9) 		25.8
(-1) 		49.8
(3) 		22.4
(-1.5) 		13.6
(-3) 		36
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 14
(3)
A 		0.8
(-3)
A 		4.6
(-1.3)
A 		12.8
(2.5)
A 		13
B 18.4
(3)
A 		2.6
(-3)
A 		8.3
(-0.8)
A 		3.3
(-2.7)
A 		16
C 12.2
(0.4)
A 		19.9
(3)
A 		16.5
(1.8)
A 		2.3
(-3)
A 		18
avr 14.9
(3) 		7.8
(-1.8) 		9.8
(-0.5) 		6.1
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 9.3
(0.3)
A 		16
(3)
A 		4.8
(-1.6)
A 		15.1
(2.6)
A 		8.5
(-0.1)
A 		1.3
(-3)
A 		15
B 10.2
(1.6)
A 		11.8
(2.5)
A 		12.2
(2.8)
A 		12.6
(3)
A 		2.6
(-3)
A 		5
(-1.6)
A 		10
C 16.9
(3)
A 		9.5
(0.2)
A 		1.3
(-3)
A 		8.6
(-0.2)
A 		10.5
(0.5)
A 		7.4
(-0.7)
A 		16
avr 12.1
(2.8) 		12.4
(3) 		6.1
(-1.8) 		12.1
(2.8) 		7.2
(-1) 		4.6
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191636_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15083
Sequence Type Exemplar sequence
Representative Public ID K02H11.7 NCBI
Target Description K02H11.7 /REP_DB=WormBase Gene ID /WP=CE18004 /GEN=str-243 /TR=O61982 /GB=AAC17786.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071036(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071036 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-243) (str-243) mRNA, complete cds. 11/11 None
K02H11.7 ENSEMBL cdna:known chromosome:CEL140:V:1522614:1524053:1 gene:K02H11.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000029156 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1522613-1524053(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-243
Ensembl K02H11.7
Entrez Gene 192043 Entrez gene
SwissProt O61982 EMBL-EBI
WormBase CE18004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 1.0E-175
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 1.0E-125
blast H88985 protein C50H11.9 [imported] - Caenorhabditis elegans 1.0E-117
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.4E-13
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.7E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503437.1 7 13-30,43-62,94-116,129-151,198-220,240-262,282-304
K02H11.7 7 13-30,43-62,94-116,129-151,198-220,240-262,282-304
Sequence
Target Sequence 
>C. ELEGANS:191636_AT
atggagtcacgtggtcaggtttattaattgcattccttcatccttttgaggaaacagata
caattttgaggaaaacatatttactcgaacgcaatttaacgttgtctgacataacttatg
ttggaacaaactattggattccaactgataatgggcaagaagttctaaatctaagaatcg
gaatcgggatgactctaattatgtcattggttaccagttcaatagttacaattttagttt
ttgcaacactgtgctatcacaaaattgagtctcttgttaaagtatccagtaactccactc
aatatcgacttcttcaattacaactgctaaattctctagtcggacaggcgctgatcccag
ctgtattgatgcttggccctagttccactgcattcgtctctccattttttcacgaaggaa
gtgaatcaataggtgcattatttggaattacaatttcgttgtatccagcattggatccac
ttccgacaatgtttgtgatcaagagctatcgagaagcaatattcggatgctgccggaaaa
ccacaagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGAGTCACGTGGTCAGGTTTATT 288 51 428 Antisense
ATTAATTGCATTCCTTCATCCTTTT 204 13 450 Antisense
GTTTTTGCAACACTGTGCTATCACA 40 449 664 Antisense
AAAGTATCCAGTAACTCCACTCAAT 209 123 706 Antisense
AACTCCACTCAATATCGACTTCTTC 477 141 718 Antisense
TTCTCTAGTCGGACAGGCGCTGATC 184 693 759 Antisense
GGCGCTGATCCCAGCTGTATTGATG 394 541 774 Antisense
TGTATTGATGCTTGGCCCTAGTTCC 407 559 789 Antisense
GTATCCAGCATTGGATCCACTTCCG 456 455 888 Antisense
TGGATCCACTTCCGACAATGTTTGT 76 551 899 Antisense
GGATGCTGCCGGAAAACCACAAGAG 692 513 952 Antisense
Sequence Source Affymetrix Proprietary Database