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[191635_at] 7TM chemoreceptor, srh family

Description F07C4.14 /REP_DB=WormBase Gene ID /WP=CE26677 /GEN=srh-234 /TR=Q9GS03 /GB=AAG24047.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 45      4grp_total > 36      6grp_cgc > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 16.7
(-1)
A 		33.3
(2.3)
A 		6.9
(-3)
A 		36.6
(3)
A 		30
B 7.2
(-2.7)
A 		41.1
(3)
A 		5.5
(-3)
A 		8.7
(-2.5)
A 		36
C 33
(2.3)
A 		37.3
(3)
A 		2.2
(-3)
A 		8.3
(-2)
A 		35
avr 19
(-0.4) 		37.2
(3) 		4.9
(-3) 		17.9
(-0.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 9.5
(-0.9)
A 		6.4
(-2.6)
A 		16.8
(3)
A 		8.8
(-1.3)
A 		10.1
(-0.6)
A 		5.7
(-3)
A 		11
B 6.9
(-2.5)
A 		10.4
(-1.4)
A 		20.1
(1.5)
A 		5.1
(-3)
A 		6.5
(-2.6)
A 		24.9
(3)
A 		20
C 8
(-1.9)
A 		29.1
(3)
A 		3.2
(-3)
A 		7.8
(-1.9)
A 		4.1
(-2.8)
A 		3.6
(-2.9)
A 		26
avr 8.1
(-2.1) 		15.3
(3) 		13.4
(1.6) 		7.2
(-2.8) 		6.9
(-3) 		11.4
(0.2) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 6.1
(1.8)
A 		7.2
(3)
A 		1.8
(-3)
A 		5.4
(1)
A 		5
B 2.3
(-2.3)
A 		10.2
(3)
A 		1.3
(-3)
A 		1.9
(-2.6)
A 		9
C 10.9
(3)
A 		10.7
(2.9)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		10
avr 6.4
(0.8) 		9.4
(3) 		1.3
(-3) 		2.9
(-1.8) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.8
(-2)
A 		2.3
(-0.7)
A 		3.7
(3)
A 		2.2
(-0.9)
A 		3
(1.2)
A 		1.4
(-3)
A 		2
B 2.4
(-2.2)
A 		3.5
(-1.4)
A 		4.9
(-0.3)
A 		1.3
(-3)
A 		2.6
(-2)
A 		9.3
(3)
A 		8
C 3
(-1.4)
A 		8.9
(3)
A 		0.8
(-3)
A 		1.6
(-2.4)
A 		1.3
(-2.6)
A 		1.2
(-2.7)
A 		8
avr 2.4
(-1.7) 		4.9
(3) 		3.1
(-0.4) 		1.7
(-3) 		2.3
(-1.9) 		4
(1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191635_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12204
Sequence Type Exemplar sequence
Representative Public ID F07C4.14 NCBI
Target Description F07C4.14 /REP_DB=WormBase Gene ID /WP=CE26677 /GEN=srh-234 /TR=Q9GS03 /GB=AAG24047.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072581 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-234) (srh-234) mRNA, complete cds. 11/11 None
F07C4.14 ENSEMBL cdna:known chromosome:CEL140:V:7652834:7654449:-1 gene:F07C4.14 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003398 8/11 Cross Hyb Matching Probes None
GENEFINDER00000003408 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7652834-7654450(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-234
Ensembl F07C4.14
Entrez Gene 184136 Entrez gene
SwissProt Q9GS03 EMBL-EBI
WormBase CE26677 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_504982 Serpentine Receptor, class H family member (srh-234) [Caenorhabditis elegans] gb|AAG24047.2| Serpentine receptor, class h protein 234 [Caenorhabditis elegans] 0.0
blast CAB04854 Hypothetical protein T26H5.3 [Caenorhabditis elegans] ref|NP_506842.1| Serpentine Receptor, class H family member (srh-239) [Caenorhabditis elegans] 1.0E-139
blast CAA16501 Hypothetical protein F08E10.1 [Caenorhabditis elegans] ref|NP_507423.1| Serpentine Receptor, class H family member (srh-235) [Caenorhabditis elegans] 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504982.1 7 15-37,58-80,90-112,133-152,191-213,234-256,271-290
F07C4.14 7 15-37,58-80,90-112,133-152,191-213,234-256,271-290
Sequence
Target Sequence 
>C. ELEGANS:191635_AT
accagttcaatttgtcctaccggatcaagagattggaagggaattttcttggacgttgtt
ggaatgcatgcccgaacttcctagtgacggacggcctctatttgtacttgcaacggacat
tactgccccagccatcggaattggagtctcctgttttgtaccaactgttcaatgtggatc
ctttctcacacttaacatttataacttgatatttgcaagaccaagtggcatttctaagag
gacaattgaaatgcaacacaagcttgttatagcgctaattgtacagtcctccgttacctt
tgtgctctttattgtccccgtccagtgcatcgtcacatttgtttatttccatcatcagaa
tcaatttcacaacaatttaattttctttgctcttgccattcatggaatcgcgtcaactct
cattatgatatttgcccataaaccatatcgtgattttgtattatctccgatttaccgatt
cacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCAGTTCAATTTGTCCTACCGGAT 465 83 447 Antisense
GGACGTTGTTGGAATGCATGCCCGA 77 519 497 Antisense
CATGCCCGAACTTCCTAGTGACGGA 103 209 513 Antisense
ACTTGCAACGGACATTACTGCCCCA 156 103 552 Antisense
CTGCCCCAGCCATCGGAATTGGAGT 278 235 569 Antisense
ATGTGGATCCTTTCTCACACTTAAC 703 49 618 Antisense
ATAGCGCTAATTGTACAGTCCTCCG 75 23 715 Antisense
CGTTACCTTTGTGCTCTTTATTGTC 303 247 738 Antisense
TTCTTTGCTCTTGCCATTCATGGAA 128 691 829 Antisense
ATTCATGGAATCGCGTCAACTCTCA 541 9 844 Antisense
TTATCTCCGATTTACCGATTCACAG 413 679 907 Antisense
Sequence Source Affymetrix Proprietary Database