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[191634_at] Ser/Thr protein phosphatase

Description Y40H4A.2 /REP_DB=WormBase Gene ID /WP=CE21811 /TR=Q9XW30 /GB=CAA22302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatase
Cluster 6grp_total > 98      4grp_total > 04      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 10.3
(-3)
A 		18.1
(3)
A 		10.7
(-2.7)
A 		12.4
(-1.4)
A 		8
B 39.3
(-0.7)
A 		11.7
(-3)
A 		15.8
(-2.7)
A 		85
(3)
A 		73
C 18.4
(-2.2)
A 		17.4
(-2.3)
A 		8.1
(-3)
A 		85.2
(3)
A 		77
avr 22.7
(-1.6) 		15.7
(-2.5) 		11.5
(-3) 		60.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 6.4
(-3)
A 		11.7
(-2.8)
A 		23
(-2.2)
A 		15.6
(-2.6)
A 		105.8
(1.5)
A 		137.5
(3)
A 		131
B 9.3
(-3)
A 		11.3
(-2.9)
A 		9.4
(-3)
A 		23.9
(-2.4)
A 		140.5
(2.3)
A 		158.8
(3)
A 		150
C 4.7
(-3)
A 		12.4
(-2.7)
A 		9.9
(-2.8)
A 		9.4
(-2.8)
A 		74.6
(-0.3)
A 		162
(3)
A 		157
avr 6.8
(-3) 		11.8
(-2.8) 		14.1
(-2.7) 		16.3
(-2.6) 		107
(1.1) 		152.8
(3) 		146
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.7
(2.4)
A 		3.9
(3)
A 		2.8
(-0.1)
A 		1.8
(-3)
A 		2
B 12.5
(0.8)
A 		2.9
(-3)
A 		3.7
(-2.7)
A 		18.1
(3)
A 		15
C 6.1
(-1.3)
A 		5
(-1.9)
A 		2.8
(-3)
A 		14.4
(3)
A 		12
avr 7.4
(0.1) 		3.9
(-2.4) 		3.1
(-3) 		11.4
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 1.2
(-3)
A 		4.2
(-2.4)
A 		5
(-2.3)
A 		4
(-2.5)
A 		31.9
(2.7)
A 		33.5
(3)
A 		32
B 3.2
(-2.9)
A 		3.8
(-2.8)
A 		2.3
(-3)
A 		6.3
(-2.6)
A 		57.1
(2.8)
A 		59.2
(3)
A 		57
C 1.7
(-3)
A 		3.8
(-2.8)
A 		2.5
(-2.9)
A 		1.9
(-3)
A 		24.1
(-0.4)
A 		54.2
(3)
A 		53
avr 2
(-3) 		3.9
(-2.8) 		3.3
(-2.8) 		4.1
(-2.7) 		37.7
(1.6) 		49
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191634_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14471
Sequence Type Exemplar sequence
Representative Public ID Y40H4A.2 NCBI
Target Description Y40H4A.2 /REP_DB=WormBase Gene ID /WP=CE21811 /TR=Q9XW30 /GB=CAA22302.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Ser-Thr protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074208(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074208 NCBI Caenorhabditis elegans Y40H4A.2 (Y40H4A.2) mRNA, complete cds. 10/11 None
GENEFINDER00000025601 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:14585929:14588025:-1 9/11 None
Y40H4A.2 ENSEMBL cdna:known chromosome:CEL140:V:14585929:14588025:-1 gene:Y40H4A.2 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025587 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14585928-14588025(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ser/Thr protein phosphatase
Ensembl Y40H4A.2
Entrez Gene 189799 Entrez gene
SwissProt Q9XW30 EMBL-EBI
WormBase CE35916 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA22302 Hypothetical protein Y40H4A.2 [Caenorhabditis elegans] ref|NP_506609.2| Y40H4A.2 [Caenorhabditis elegans] 0.0
blast CAA22302 Hypothetical protein Y40H4A.2 [Caenorhabditis elegans] ref|NP_506609.2| Y40H4A.2 [Caenorhabditis elegans] 1.0E-177
blast CAE60869 Hypothetical protein CBG04580 [Caenorhabditis briggsae] 1.0E-119
blast CAE60869 Hypothetical protein CBG04580 [Caenorhabditis briggsae] 1.0E-108
blast XP_667490 hypothetical protein Chro.70303 [Cryptosporidium hominis] gb|EAL37255.1| hypothetical protein Chro.70303 [Cryptosporidium hominis] 2.0E-64
blast XP_667490 hypothetical protein Chro.70303 [Cryptosporidium hominis] gb|EAL37255.1| hypothetical protein Chro.70303 [Cryptosporidium hominis] 5.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 4.5E-36
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 1.7E-35
Sequence
Target Sequence 
>C. ELEGANS:191634_AT
gatggcctatcattgcttgtatccagatcatttgttcctgtgtcgtggaaaccatgaaga
ttataacaccacaatgacctatggattctttgatgaatgtcgtatgaagtacgggaaaaa
gggtacacttgcatggcttcacatcattaatgcattcaatcatttgccgctggccgctct
gattttggataaagttttgtgtatgcacggaggtatttcaccgcatattcaaaagttgga
ggatattgataagatccaacgtcctacgttcattccatcgtacggtctcgcttgtgattt
gaatgttggctggtcactctcagctagaggaatctctttctccttcgacgatatcactat
cgagaagttttgccaagataatggtcttgatctgattgtcagagcacatcagatttctag
tgagatgattcgaggtggccacaaatggcatgcaaatggacgaatggttacaattttctc
agccgccaactacttgagcatgggaaacgattcttgtgtgattcgtattgatgagcagaa
aaccatgcaattctgtctgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCCTATCATTGCTTGTATCCA 156 407 396 Antisense
TACACTTGCATGGCTTCACATCATT 431 643 519 Antisense
TGCATTCAATCATTTGCCGCTGGCC 466 579 546 Antisense
GCTGGCCGCTCTGATTTTGGATAAA 686 293 564 Antisense
AGATCCAACGTCCTACGTTCATTCC 193 67 647 Antisense
TCGTACGGTCTCGCTTGTGATTTGA 363 601 673 Antisense
TGTTGGCTGGTCACTCTCAGCTAGA 613 561 699 Antisense
GCTAGAGGAATCTCTTTCTCCTTCG 328 301 718 Antisense
TGGTTACAATTTTCTCAGCCGCCAA 417 551 860 Antisense
CAGCCGCCAACTACTTGAGCATGGG 137 203 875 Antisense
GAAAACCATGCAATTCTGTCTGCTC 199 355 933 Antisense
Sequence Source Affymetrix Proprietary Database