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[191632_at] B.subtilis SFP protein like

Description T28H10.1 /REP_DB=WormBase Gene ID /WP=CE06529 /TR=Q22856 /GB=CAA99933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=B.subtilis SFP protein like
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 74      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 82      6grp_total > 64      4grp_total > 11      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1246
1 2 3 4 range
A 359.7
(-2.1)
P 		317.7
(-2.3)
P 		174
(-3)
P 		1420.1
(3)
P 		1246
B 357.1
(-2.1)
P 		320.2
(-2.3)
P 		190.4
(-3)
P 		1313.7
(3)
P 		1123
C 431.2
(-1.9)
P 		279.9
(-2.7)
P 		228
(-3)
P 		1374.4
(3)
P 		1146
avr 382.7
(-2.1) 		305.9
(-2.4) 		197.5
(-3) 		1369.4
(3) 		1172

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 220
1 2 3 4 5 6 range
A 362.5
(0.7)
P 		305.6
(-2.5)
P 		396.5
(2.7)
P 		401.9
(3)
P 		326.5
(-1.3)
P 		297.7
(-3)
P 		104
B 292.4
(-2)
P 		269.9
(-3)
P 		407.3
(3)
P 		292.1
(-2)
P 		324.6
(-0.6)
P 		370.2
(1.4)
P 		137
C 308.3
(-0.7)
P 		244.4
(-2.5)
P 		315.2
(-0.6)
P 		381.8
(1.3)
P 		225.4
(-3)
P 		445.6
(3)
P 		220
avr 321.1
(-0.1) 		273.3
(-3) 		373
(3) 		358.6
(2.1) 		292.2
(-1.9) 		371.2
(2.9) 		100
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 236
1 2 3 4 range
A 131
(0.2)
P 		69
(-2.1)
P 		45.5
(-3)
P 		207.9
(3)
P 		162
B 113.9
(-1.2)
P 		79.1
(-2.1)
P 		44.1
(-3)
P 		280
(3)
P 		236
C 142.7
(-0.5)
P 		80.5
(-3)
P 		79.5
(-3)
P 		231.7
(3)
P 		152
avr 129.2
(-0.6) 		76.2
(-2.4) 		56.4
(-3) 		239.9
(3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 66.8
(-3)
P 		108.7
(3)
P 		86.4
(-0.2)
P 		101.9
(2)
P 		98.5
(1.5)
P 		72.5
(-2.2)
P 		42
B 101.7
(-0.6)
P 		89.8
(-1.8)
P 		98.9
(-0.9)
P 		77.4
(-3)
P 		131.9
(2.4)
P 		138
(3)
P 		61
C 114.3
(0.3)
P 		74.6
(-2.9)
P 		80.2
(-2.4)
P 		76.8
(-2.7)
P 		72.9
(-3)
P 		149.2
(3)
P 		76
avr 94.3
(-1.5) 		91
(-2) 		88.5
(-2.5) 		85.4
(-3) 		101.1
(-0.3) 		119.9
(3) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191632_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12937
Sequence Type Exemplar sequence
Representative Public ID T28H10.1 NCBI
Target Description T28H10.1 /REP_DB=WormBase Gene ID /WP=CE06529 /TR=Q22856 /GB=CAA99933.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=B.subtilis SFP protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073734 NCBI Caenorhabditis elegans T28H10.1 (T28H10.1) mRNA, complete cds. 11/11 None
SNAP00000023144 ENSEMBL cdna:SNAP chromosome:CEL140:V:12506393:12507690:1 11/11 None
GENEFINDER00000023149 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12506393:12507784:1 11/11 None
T28H10.1 ENSEMBL cdna:known chromosome:CEL140:V:12506393:12507784:1 gene:T28H10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12506392-12507784(+) 100.0 100.0
Public Domain and Genome References
Gene Title B.subtilis SFP protein like
Ensembl T28H10.1
Entrez Gene 189061 Entrez gene
SwissProt Q22856 EMBL-EBI
WormBase CE06529 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6633 fatty acid biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
287 magnesium ion binding inferred from electronic annotation QuickGO AmiGO
8897 phosphopantetheinyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99933 Hypothetical protein T28H10.1 [Caenorhabditis elegans] ref|NP_506135.1| T28H10.1 [Caenorhabditis elegans] 1.0E-172
blast CAA99933 Hypothetical protein T28H10.1 [Caenorhabditis elegans] ref|NP_506135.1| T28H10.1 [Caenorhabditis elegans] 1.0E-155
blast CAE75502 Hypothetical protein CBG23511 [Caenorhabditis briggsae] 1.0E-114
blast CAE75502 Hypothetical protein CBG23511 [Caenorhabditis briggsae] 1.0E-107
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 1.0E-40
blast NP_508153 T04G9.4 [Caenorhabditis elegans] gb|AAA82460.1| Hypothetical protein T04G9.4 [Caenorhabditis elegans] 4.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR008278 EMBL-EBI 4-phosphopantetheinyl transferase 1.3E-23
Sequence
Target Sequence 
>C. ELEGANS:191632_AT
gaatacaacgtatcgcatcatggtgatctagttgtattagctaccggagatactagaata
ggtgtcgatgtgatgagagttaatgaagctcggcgtgagactgctagtgaacaaatgaat
acgttgaagcgacatttcagtgaaaatgaaatagaaatggttaaagggggagataaatgt
gaacttaaaagatggcacgcattctacagaatttggtgtctgaaagaatcaattctaaaa
gctacgggagttggacttccagatggactgcacaatcatactttccaagtagattccagt
tatgatcacgcgtcaggtcactcaacagtttcaacccaatattatcatcgtttgattcca
caaccacaatggatttttgaagagtcatttattggagagaatcattgtgtcgctgttgct
tcagaagtatctccgtctactacttcctgtgctataccatttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATACAACGTATCGCATCATGGTG 364 325 298 Antisense
GAAGCTCGGCGTGAGACTGCTAGTG 173 343 382 Antisense
AAGATGGCACGCATTCTACAGAATT 279 155 486 Antisense
AGCTACGGGAGTTGGACTTCCAGAT 595 77 537 Antisense
GACTGCACAATCATACTTTCCAAGT 280 375 563 Antisense
TATGATCACGCGTCAGGTCACTCAA 611 655 598 Antisense
GGTCACTCAACAGTTTCAACCCAAT 337 503 613 Antisense
ATCATCGTTTGATTCCACAACCACA 688 29 641 Antisense
GAGAATCATTGTGTCGCTGTTGCTT 510 391 694 Antisense
GAAGTATCTCCGTCTACTACTTCCT 643 335 721 Antisense
TACTTCCTGTGCTATACCATTTCAA 82 645 738 Antisense
Sequence Source Affymetrix Proprietary Database