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[191631_at] A. thaliana ELI3-2 protein

Description R05F9.11 /REP_DB=WormBase Gene ID /WP=CE04814 /TR=Q21749 /GB=AAA83173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. thaliana ELI3-2 protein
Cluster 6grp_high1_10_10 > 97      6grp_total > 97      4grp_total > 01      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 38.3
(-2)
A 		25.4
(-3)
A 		59.3
(-0.5)
P 		106.6
(3)
P 		81
B 53.9
(-2.5)
A 		59.9
(-1)
A 		51.7
(-3)
A 		75.8
(3)
P 		24
C 46.4
(-2.8)
M 		42.9
(-3)
A 		48.8
(-2.7)
P 		156.9
(3)
P 		114
avr 46.2
(-2.7) 		42.7
(-3) 		53.3
(-2.1) 		113.1
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 190
1 2 3 4 5 6 range
A 57.2
(-3)
A 		71.5
(-1.8)
P 		59.7
(-2.8)
P 		98.8
(0.4)
P 		120.9
(2.2)
P 		131.3
(3)
P 		74
B 50.4
(-2.3)
P 		67.3
(-1.6)
M 		34.8
(-3)
A 		74
(-1.3)
P 		156.4
(2.4)
P 		170.9
(3)
P 		136
C 25.4
(-3)
P 		57.1
(-2)
A 		75.7
(-1.4)
P 		80.3
(-1.3)
P 		125
(0.1)
P 		215.5
(3)
P 		190
avr 44.3
(-3) 		65.3
(-2) 		56.7
(-2.4) 		84.4
(-1.1) 		134.1
(1.2) 		172.6
(3) 		128
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 14
(2)
A 		5.5
(-3)
A 		15.5
(2.9)
P 		15.6
(3)
P 		10
B 17.2
(3)
A 		14.8
(0.2)
A 		12
(-3)
A 		16.1
(1.7)
P 		5
C 15.4
(-1.7)
M 		12.3
(-3)
A 		17
(-1)
P 		26.5
(3)
P 		14
avr 15.5
(0.2) 		10.9
(-3) 		14.8
(-0.2) 		19.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 10.5
(-3)
A 		25.4
(0.4)
P 		13
(-2.4)
P 		25
(0.3)
P 		36.5
(3)
P 		32
(2)
P 		26
B 17.5
(-2)
P 		22.4
(-1.5)
M 		8.4
(-3)
A 		19.6
(-1.8)
P 		63.6
(3)
P 		63.7
(3)
P 		55
C 9.4
(-3)
P 		17.4
(-2.2)
A 		19.3
(-2.1)
P 		16.2
(-2.3)
P 		40.5
(-0)
P 		72.1
(3)
P 		63
avr 12.5
(-3) 		21.7
(-1.7) 		13.6
(-2.8) 		20.3
(-1.9) 		46.9
(1.8) 		55.9
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191631_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5089
Sequence Type Exemplar sequence
Representative Public ID R05F9.11 NCBI
Target Description R05F9.11 /REP_DB=WormBase Gene ID /WP=CE04814 /TR=Q21749 /GB=AAA83173.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=A. thaliana ELI3-2 protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062495(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062495 NCBI Caenorhabditis elegans R05F9.11 (R05F9.11) mRNA, complete cds. 11/11 None
SNAP00000043874 ENSEMBL cdna:SNAP chromosome:CEL140:II:4911854:4914201:-1 11/11 None
GENEFINDER00000043882 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4911854:4914201:-1 11/11 None
R05F9.11 ENSEMBL cdna:known chromosome:CEL140:II:4911854:4914201:-1 gene:R05F9.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4911851-4914199(-) 100.0 100.0
Public Domain and Genome References
Gene Title A. thaliana ELI3-2 protein
Ensembl R05F9.11
Entrez Gene 187618 Entrez gene
SwissProt Q21749 EMBL-EBI
WormBase CE04814 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494896 R05F9.11 [Caenorhabditis elegans] gb|AAA83173.1| Hypothetical protein R05F9.11 [Caenorhabditis elegans] 0.0
blast CAB54425 Hypothetical protein Y39E4B.2 [Caenorhabditis elegans] ref|NP_499719.1| Y39E4B.2 [Caenorhabditis elegans] 2.0E-85
blast CAB54425 Hypothetical protein Y39E4B.2 [Caenorhabditis elegans] ref|NP_499719.1| Y39E4B.2 [Caenorhabditis elegans] 4.0E-80
blast CAE58999 Hypothetical protein CBG02273 [Caenorhabditis briggsae] 2.0E-68
blast CAE58999 Hypothetical protein CBG02273 [Caenorhabditis briggsae] 2.0E-62
Sequence
Target Sequence 
>C. ELEGANS:191631_AT
cgattcgaagattgtccccggtagaaagaagtcacgaaagatgtccgcaaaaaaagctaa
aataaatttgccgagaattgtaaaatcggaacaaattccaccattgagagggataatgaa
gaatgaagatttgaacaattcagagagttgtattcatgaaaatgtagatattgttctgac
acaaagtgactctcttaaaaatgaaattaaatcggagatagtagcattaaattcctccac
gaaaacttcatttaaatcttctcgacgagtatctttccgtgaaaaggaaaacggtgagct
cgacaacacaatccacgagattccaagaagatgccacagttctgatgaatcggacgaaga
gaactccgatgaagatcctgttgccgagtcttctcacaggcctcacctaactatacagct
gaaaccaattcatgaaaaatacgaaacttccataagtatgaatttaatttatatgaaaaa
taaagaaaaactcatttcagctgatgatttcaatatattcaagccagtggaaggtgctga
agagacttttgagacgccattcgattcgcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGATTCGAAGATTGTCCCCGGTAGA 403 245 972 Antisense
GTTCTGACACAAAGTGACTCTCTTA 704 441 1144 Antisense
TAGTAGCATTAAATTCCTCCACGAA 70 653 1190 Antisense
AAACTTCATTTAAATCTTCTCGACG 86 129 1214 Antisense
CTTCTCGACGAGTATCTTTCCGTGA 465 219 1229 Antisense
GTGAGCTCGACAACACAATCCACGA 598 483 1265 Antisense
GATGCCACAGTTCTGATGAATCGGA 283 415 1301 Antisense
AGAGAACTCCGATGAAGATCCTGTT 296 69 1329 Antisense
CCTGTTGCCGAGTCTTCTCACAGGC 389 265 1348 Antisense
CAGGCCTCACCTAACTATACAGCTG 282 209 1368 Antisense
TTGAGACGCCATTCGATTCGCTTAT 531 705 1520 Antisense
Sequence Source Affymetrix Proprietary Database