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[191629_at]

Description C11H1.1 /REP_DB=WormBase Gene ID /WP=CE05260 /TR=Q17913 /GB=CAA94118.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 246.7
(3)
P 		163.7
(-3)
P 		195.9
(-0.7)
P 		187.2
(-1.3)
P 		83
B 264.1
(3)
P 		201.8
(0.5)
P 		116.5
(-3)
P 		185.5
(-0.2)
P 		148
C 304.4
(3)
P 		240.6
(0.5)
P 		151
(-3)
P 		191.6
(-1.4)
P 		153
avr 271.7
(3) 		202
(-0.6) 		154.5
(-3) 		188.1
(-1.3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 244.1
(1.8)
P 		267.1
(3)
P 		184.7
(-1.3)
P 		175.8
(-1.8)
P 		153.1
(-3)
P 		224.8
(0.8)
P 		114
B 316.5
(3)
P 		248.2
(0.4)
P 		180.5
(-2.1)
P 		156.2
(-3)
P 		162.4
(-2.8)
P 		183.9
(-2)
P 		160
C 392
(3)
P 		221.1
(-1.5)
P 		270.2
(-0.2)
P 		175.2
(-2.7)
P 		165.7
(-3)
P 		182.5
(-2.6)
P 		226
avr 317.5
(3) 		245.5
(0.3) 		211.8
(-1) 		169.1
(-2.7) 		160.4
(-3) 		197.1
(-1.6) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 89.8
(3)
P 		35.5
(-2.2)
P 		51.2
(-0.7)
P 		27.4
(-3)
P 		62
B 84.2
(3)
P 		49.8
(-0.6)
P 		27
(-3)
P 		39.5
(-1.7)
P 		57
C 100.8
(3)
P 		69.2
(0.2)
P 		52.6
(-1.2)
P 		32.3
(-3)
P 		69
avr 91.6
(3) 		51.5
(-1.1) 		43.6
(-1.9) 		33.1
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 45
(-2.5)
P 		95
(3)
P 		40.2
(-3)
P 		44.6
(-2.5)
P 		46.2
(-2.3)
P 		54.7
(-1.4)
P 		55
B 110.1
(3)
P 		82.6
(0.6)
P 		43.8
(-2.8)
P 		41.4
(-3)
P 		66
(-0.9)
P 		68.6
(-0.6)
P 		69
C 145.3
(3)
P 		67.5
(-1.2)
P 		68.8
(-1.2)
P 		35.2
(-3)
P 		53.6
(-2)
P 		61.1
(-1.6)
P 		110
avr 100.1
(3) 		81.7
(1.2) 		50.9
(-1.9) 		40.4
(-3) 		55.3
(-1.5) 		61.5
(-0.9) 		60
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191629_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17973
Sequence Type Exemplar sequence
Representative Public ID C11H1.1 NCBI
Target Description C11H1.1 /REP_DB=WormBase Gene ID /WP=CE05260 /TR=Q17913 /GB=CAA94118.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=Thrombospondin type 1 domain
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171800(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171800 NCBI Caenorhabditis elegans C11H1.8 (C11H1.8) mRNA, complete cds. 9/11 None
GENEFINDER00000018169 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14286251:14296575:-1 9/11 None
SNAP00000018158 ENSEMBL cdna:SNAP chromosome:CEL140:X:14295741:14296575:-1 9/11 None
C11H1.8 ENSEMBL cdna:known chromosome:CEL140:X:14295741:14296575:-1 gene:C11H1.8 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14295740-14303059(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C11H1.8
Entrez Gene 181535 Entrez gene
SwissProt Q8MQE1 EMBL-EBI
WormBase CE31414 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94122 Hypothetical protein E02H4.3a [Caenorhabditis elegans] emb|CAA91979.2| Hypothetical protein E02H4.3a [Caenorhabditis elegans] ref|NP_741928.1| E02H4.3a [Caenorhabditis elegans] 0.0
blast CAE63011 Hypothetical protein CBG07253 [Caenorhabditis briggsae] 0.0
blast CAD44096 Hypothetical protein E02H4.3b [Caenorhabditis elegans] emb|CAD44105.1| Hypothetical protein E02H4.3b [Caenorhabditis elegans] ref|NP_741927.1| E02H4.3b [Caenorhabditis elegans] 1.0E-165
blast CAD44095 Hypothetical protein C11H1.8 [Caenorhabditis elegans] ref|NP_741929.1| C11H1.8 [Caenorhabditis elegans] 2.0E-88
blast T19206 hypothetical protein C11H1.1 - Caenorhabditis elegans 2.0E-88
Protein Families
Method ID Description E-Value
hanks 3.1.5 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; Cdk6 6.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.0E-54
Sequence
Target Sequence 
>C. ELEGANS:191629_AT
tctccccgtccacggtatggttagcacacgatcgggccgtgtagctggtgcgattaatac
gcgattggtcaatagcaaagaaatcaattatgctgaaccaaaacgaaaacggacggcggc
tgctcgtggattttcggatccaattcaagcaaaaagatccaggaaaaaagccaacggaga
actgccaaaaacatcaagcacagcagctccaagtcttgtacggtccagtcgtcaaactga
ttcttatgtgaacggcacaaacaacaatagcaaaaaattatcagcatcagttgcaacgtc
gaggaacgggtcacgccgtctcagtaaaccaagcaccagtagcacaagagccactcaatc
gtcgatgacaaatggaacgacggcgacacaaacggtgcctcattttgaagtgccaaccgc
gcaagtagctaaacttttggctgcaccatcaaccgtccaagttgcggaaatcactctgag
ctcggatgatgatgaaccgacaacgaagaagattgccagtccaattcttccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCCGTCCACGGTATGGTTAGC 698 585 1362 Antisense
TATGGTTAGCACACGATCGGGCCGT 34 253 1377 Antisense
CGGCTGCTCGTGGATTTTCGGATCC 413 241 1478 Antisense
AAGCACAGCAGCTCCAAGTCTTGTA 167 151 1557 Antisense
GTCTTGTACGGTCCAGTCGTCAAAC 146 467 1574 Antisense
CCGTCTCAGTAAACCAAGCACCAGT 399 265 1677 Antisense
CAAGAGCCACTCAATCGTCGATGAC 334 185 1706 Antisense
CGACGGCGACACAAACGGTGCCTCA 443 251 1739 Antisense
CGGTGCCTCATTTTGAAGTGCCAAC 129 245 1754 Antisense
TAAACTTTTGGCTGCACCATCAACC 246 639 1791 Antisense
AAGATTGCCAGTCCAATTCTTCCAC 85 157 1870 Antisense
Sequence Source Affymetrix Proprietary Database