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[191628_at] sodium/phosphate transporter

Description D1046.4 /REP_DB=WormBase Gene ID /WP=CE03097 /TR=Q18935 /GB=CAA92292.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_total > 29      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 69.9
(2.9)
A 		54.6
(-3)
A 		70.2
(3)
A 		66.7
(1.7)
A 		16
B 92.5
(3)
A 		74.8
(0.5)
A 		67.4
(-0.5)
A 		49.2
(-3)
A 		43
C 99.1
(-0.1)
A 		101.5
(0.4)
A 		82.9
(-3)
A 		116.2
(3)
A 		33
avr 87.2
(3) 		77
(-1.5) 		73.5
(-3) 		77.4
(-1.3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 126.8
(3)
A 		38.6
(-1.8)
A 		28.5
(-2.4)
A 		17.2
(-3)
A 		105.3
(1.8)
A 		63.1
(-0.5)
A 		110
B 85.6
(0.5)
A 		106.9
(3)
A 		54.9
(-3)
A 		107
(3)
A 		100.6
(2.3)
A 		75.2
(-0.7)
A 		52
C 51.1
(-3)
A 		116.1
(3)
A 		101.1
(1.6)
A 		87.3
(0.3)
A 		71.1
(-1.2)
A 		57.6
(-2.4)
A 		65
avr 87.8
(2.1) 		87.2
(2) 		61.5
(-3) 		70.5
(-1.2) 		92.3
(3) 		65.3
(-2.3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 25.5
(3)
A 		11.8
(-2.2)
A 		18.3
(0.2)
A 		9.8
(-3)
A 		16
B 29.5
(3)
A 		18.5
(-0.5)
A 		15.6
(-1.4)
A 		10.5
(-3)
A 		19
C 32.8
(3)
A 		29.2
(1.4)
A 		28.9
(1.2)
A 		19.6
(-3)
A 		13
avr 29.3
(3) 		19.8
(-0.6) 		20.9
(-0.2) 		13.3
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 23.4
(1.2)
A 		13.7
(-1)
A 		6.2
(-2.6)
A 		4.4
(-3)
A 		31.8
(3)
A 		15.4
(-0.6)
A 		27
B 29.8
(0.6)
A 		35.6
(1.8)
A 		13.3
(-3)
A 		28.3
(0.3)
A 		40.9
(3)
A 		28
(0.2)
A 		28
C 19
(-2.5)
A 		35.4
(3)
A 		25.7
(-0.3)
A 		17.6
(-3)
A 		23
(-1.2)
A 		19.3
(-2.4)
A 		18
avr 24.1
(0.2) 		28.2
(1.7) 		15.1
(-3) 		16.8
(-2.4) 		31.9
(3) 		20.9
(-0.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191628_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9011
Sequence Type Exemplar sequence
Representative Public ID D1046.4 NCBI
Target Description D1046.4 /REP_DB=WormBase Gene ID /WP=CE03097 /TR=Q18935 /GB=CAA92292.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069152(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069152 NCBI Caenorhabditis elegans D1046.4 (D1046.4) mRNA, complete cds. 11/11 None
GENEFINDER00000023092 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8934916:8944040:1 11/11 None
D1046.4 ENSEMBL cdna:known chromosome:CEL140:IV:8933979:8937382:1 gene:D1046.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023085 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8934594-8937388(+) 98.52 98.52
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl D1046.4
Entrez Gene 183909 Entrez gene
SwissProt Q18935 EMBL-EBI
WormBase CE03097 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92292 Hypothetical protein D1046.4 [Caenorhabditis elegans] ref|NP_501553.1| D1046.4 [Caenorhabditis elegans] 0.0
blast CAE74073 Hypothetical protein CBG21726 [Caenorhabditis briggsae] 0.0
blast CAE74073 Hypothetical protein CBG21726 [Caenorhabditis briggsae] 1.0E-180
blast CAE61120 Hypothetical protein CBG04877 [Caenorhabditis briggsae] 1.0E-38
blast CAE61120 Hypothetical protein CBG04877 [Caenorhabditis briggsae] 4.0E-36
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501553.1 12 34-56,104-126,133-155,159-181,208-230,240-259,300-319,334-353,366-388,393-415,435-452,462-484
D1046.4 12 34-56,104-126,133-155,159-181,208-230,240-259,300-319,334-353,366-388,393-415,435-452,462-484
GENEFINDER00000023092 11 20-39,46-68,72-94,106-128,138-157,198-217,232-251,264-286,291-313,333-350,360-382
Sequence
Target Sequence 
>C. ELEGANS:191628_AT
agttttgccggttcagctgtgattatgatcacgctctttgttaccaaattccattttgac
attcaattgatcttatacgctgccatttttgcattcctttctctaacttggccatcagtt
tttaaaagctcaaatattatcagcaacaagtactacctcccagtaatggttcgaattcac
gtcgttcttttttattttggatcctttgcatcaaatattcttccattggtccttggaaga
aacacagagtcatggaataattggagatggatctggctcgtattcgctgttcttctcatt
ggctccgttatattattttggctaacattccagtttgaaaaatcagattgggatatagtg
atacctgttgaaccaccacaacctcctcgtcccgaagatattgcaccagtgtcacatcca
agaccatgtcaattttctacttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTTGCCGGTTCAGCTGTGATTA 502 63 1135 Antisense
TTATGATCACGCTCTTTGTTACCAA 525 681 1157 Antisense
ATACGCTGCCATTTTTGCATTCCTT 148 23 1209 Antisense
CCTTTCTCTAACTTGGCCATCAGTT 241 269 1230 Antisense
GTACTACCTCCCAGTAATGGTTCGA 667 451 1284 Antisense
AATGGTTCGAATTCACGTCGTTCTT 421 163 1299 Antisense
GAGATGGATCTGGCTCGTATTCGCT 38 397 1398 Antisense
TTCTTCTCATTGGCTCCGTTATATT 572 689 1424 Antisense
CTCGTCCCGAAGATATTGCACCAGT 556 231 1520 Antisense
TGCACCAGTGTCACATCCAAGACCA 99 579 1536 Antisense
GACCATGTCAATTTTCTACTTCTTT 675 383 1556 Antisense
Sequence Source Affymetrix Proprietary Database