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[191627_at] Tight junction protein like

Description F44D12.1 /REP_DB=WormBase Gene ID /WP=CE05865 /TR=Q20398 /GB=CAA92607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tight junction protein like
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 71      4grp_highest_8_8 > 52      4grp_high_8_8 > 16      6grp_highest_nonorm > 52      6grp_total > 71      4grp_total > 39      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 326
1 2 3 4 range
A 799.4
(3)
P 		553.8
(-1.5)
P 		473.6
(-3)
P 		557.5
(-1.5)
P 		326
B 746
(3)
P 		505.2
(-2.4)
P 		478.4
(-3)
P 		680.8
(1.5)
P 		268
C 747.9
(3)
P 		489.1
(-3)
P 		518.1
(-2.3)
P 		545.5
(-1.7)
P 		259
avr 764.4
(3) 		516
(-2.4) 		490
(-3) 		594.6
(-0.7) 		274

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 558
1 2 3 4 5 6 range
A 510.1
(-1.9)
P 		690.6
(0.7)
P 		765.6
(1.7)
P 		855.4
(3)
P 		760.1
(1.7)
P 		430.1
(-3)
P 		425
B 502
(-3)
P 		758.7
(0.2)
P 		727.2
(-0.2)
P 		988
(3)
P 		672.8
(-0.9)
P 		530.4
(-2.6)
P 		486
C 492.5
(-3)
P 		660.5
(-0.9)
P 		831.3
(1.3)
P 		967.8
(3)
P 		532.4
(-2.5)
P 		537.5
(-2.4)
P 		475
avr 501.5
(-3) 		703.3
(-0.2) 		774.7
(0.8) 		937.1
(3) 		655.1
(-0.9) 		499.3
(-3) 		438
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 210
1 2 3 4 range
A 291.1
(3)
P 		120.2
(-1.9)
P 		123.8
(-1.8)
P 		81.6
(-3)
P 		210
B 237.9
(3)
P 		124.8
(-2.3)
P 		110.9
(-3)
P 		145.1
(-1.4)
P 		127
C 247.6
(3)
P 		140.6
(-1.1)
P 		180.6
(0.4)
P 		92
(-3)
P 		156
avr 258.9
(3) 		128.5
(-2.1) 		138.4
(-1.7) 		106.2
(-3) 		153

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 94
(-3)
P 		245.6
(3)
P 		166.7
(-0.1)
P 		216.9
(1.9)
P 		229.4
(2.4)
P 		104.7
(-2.6)
P 		152
B 174.7
(-3)
P 		252.5
(1.7)
P 		176.6
(-2.9)
P 		261.7
(2.3)
P 		273.3
(3)
P 		197.8
(-1.6)
P 		99
C 182.5
(-1.4)
P 		201.5
(1.5)
P 		211.6
(3)
P 		194.6
(0.4)
P 		172.3
(-3)
P 		179.9
(-1.8)
P 		39
avr 150.4
(-3) 		233.2
(3) 		185
(-0.5) 		224.4
(2.4) 		225
(2.4) 		160.8
(-2.2) 		83
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191627_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9224
Sequence Type Exemplar sequence
Representative Public ID F44D12.1 NCBI
Target Description F44D12.1 /REP_DB=WormBase Gene ID /WP=CE05865 /TR=Q20398 /GB=CAA92607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Tight junction protein like
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069404 NCBI Caenorhabditis elegans F44D12.1 (F44D12.1) mRNA, complete cds. 11/11 None
SNAP00000020508 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10009788:10014086:1 11/11 None
GENEFINDER00000020522 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10009788:10014086:1 11/11 None
F44D12.1 ENSEMBL cdna:known chromosome:CEL140:IV:10009938:10014157:1 gene:F44D12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10009943-10014092(+) 100.0 100.0
Public Domain and Genome References
Gene Title Tight junction protein like
Ensembl F44D12.1
Entrez Gene 177860 Entrez gene
SwissProt Q20398 EMBL-EBI
WormBase CE05865 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92607 Hypothetical protein F44D12.1 [Caenorhabditis elegans] ref|NP_501805.1| F44D12.1 [Caenorhabditis elegans] 0.0
blast CAE59946 Hypothetical protein CBG03433 [Caenorhabditis briggsae] 0.0
blast AAF53101 CG6509-PB, isoform B [Drosophila melanogaster] gb|AAF53102.1| CG6509-PA, isoform A [Drosophila melanogaster] ref|NP_723672.1| CG6509-PA, isoform A [Drosophila melanogaster] ref|NP_609505.1| CG6509-PB, isoform B [Drosophila melanogaster] gb|AAL39731.1| LD32687p [Drosophila melanogaster] 3.0E-38
Protein Domains
Database ID Description E-Value
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 8.30000019073486
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 9.39999961853027
scop a.2.7.Methicillin resistance protein FemA probable tRNA-binding arm All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Methicillin resistance protein FemA probable tRNA-binding arm 1.70000004768372
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.9E-7
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.9E-7
Sequence
Target Sequence 
>C. ELEGANS:191627_AT
gcaaatccgttcccgaagaaggcttatgagtgggttgagaagttggatacaaaagtgaaa
cgaccggttcttttgtttggagcagttgttgagcctttccttcaaatgcttgttgatgaa
tctgataagttttcaattgttgcaagagagtctttaactgcaagtttggatgaagtatcg
gctttattgaaggataaagtattgattgattcgaaacaaaacgatgatgtttatgatctt
tatcacgtcgtatcaactgctcatattatggatatcacggctcaaggactccattgtgtc
ctccaagttgatcagtctgcaattgatcgattgaaaagatgtagaatgttccctattctt
gtgaagattcgattcaagtcagttaaacagttaaaagatgtcaatgaacatatttgtgga
gagaaaatcagttcaaaagaagccaaacagcttattgaaaaggatttgaaaatagaaaaa
gatcttgatggatcagttacacttgtagtgccaagtcataataatgtcagcttcatgatg
actcacgctgttctacagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAAATCCGTTCCCGAAGAAGGCTT 77 317 2491 Antisense
GACCGGTTCTTTTGTTTGGAGCAGT 208 377 2552 Antisense
TGGAGCAGTTGTTGAGCCTTTCCTT 333 549 2568 Antisense
GAGCCTTTCCTTCAAATGCTTGTTG 189 383 2581 Antisense
TTATCACGTCGTATCAACTGCTCAT 489 677 2730 Antisense
GATATCACGGCTCAAGGACTCCATT 321 425 2761 Antisense
AAGGACTCCATTGTGTCCTCCAAGT 160 161 2774 Antisense
GTCCTCCAAGTTGATCAGTCTGCAA 310 477 2788 Antisense
AATGTTCCCTATTCTTGTGAAGATT 58 165 2835 Antisense
GGATCAGTTACACTTGTAGTGCCAA 92 509 2980 Antisense
ATGATGACTCACGCTGTTCTACAGC 270 47 3025 Antisense
Sequence Source Affymetrix Proprietary Database