[Home] | [Total List]

[191626_s_at]

Description C25B8.4 /REP_DB=WormBase Gene ID /WP=CE27087 /TR=Q18146 /GB=AAK39193.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=asialoglycoprotein receptor
Cluster 6grp_total > 68      4grp_total > 11      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 318
1 2 3 4 range
A 79.2
(-1.4)
A 		79.7
(-1.4)
A 		7.9
(-3)
A 		276.4
(3)
P 		269
B 72.8
(-2.1)
A 		42
(-2.7)
A 		27
(-3)
A 		325.9
(3)
P 		299
C 38.2
(-2.3)
A 		53.8
(-1.9)
A 		8.6
(-3)
A 		256.6
(3)
P 		248
avr 63.4
(-1.9) 		58.5
(-2) 		14.5
(-3) 		286.3
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3446
1 2 3 4 5 6 range
A 747.4
(-1.4)
P 		140.1
(-2.7)
P 		62.5
(-2.9)
A 		5
(-3)
A 		159.2
(-2.7)
A 		2776.7
(3)
P 		2772
B 808.3
(-1.6)
P 		162.3
(-2.8)
A 		40.8
(-3)
A 		50.2
(-3)
A 		159.3
(-2.8)
A 		3450.9
(3)
P 		3410
C 709.6
(-1.3)
P 		138.5
(-2.7)
A 		62.6
(-2.9)
A 		6.2
(-3)
A 		159.9
(-2.6)
P 		2462.1
(3)
P 		2456
avr 755.1
(-1.5) 		147
(-2.7) 		55.3
(-2.9) 		20.5
(-3) 		159.5
(-2.7) 		2896.6
(3) 		2876
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 28.8
(1.2)
A 		17.3
(-0.6)
A 		2.1
(-3)
A 		40.5
(3)
P 		38
B 23.2
(-1.4)
A 		10.4
(-2.6)
A 		6.3
(-3)
A 		69.4
(3)
P 		63
C 12.6
(-1.6)
A 		15.5
(-1.1)
A 		3
(-3)
A 		43.3
(3)
P 		40
avr 21.5
(-0.8) 		14.4
(-1.7) 		3.8
(-3) 		51.1
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1286
1 2 3 4 5 6 range
A 137.8
(-1.8)
P 		49.8
(-2.6)
P 		13.6
(-2.9)
A 		1.3
(-3)
A 		48
(-2.6)
A 		676
(3)
P 		675
B 281.2
(-1.7)
P 		54
(-2.8)
A 		9.9
(-3)
A 		13.3
(-3)
A 		64.7
(-2.7)
A 		1286.8
(3)
P 		1277
C 263
(-1.1)
P 		42.3
(-2.7)
A 		15.9
(-2.9)
A 		1.2
(-3)
A 		51.8
(-2.6)
P 		824.2
(3)
P 		823
avr 227.3
(-1.6) 		48.7
(-2.7) 		13.1
(-2.9) 		5.3
(-3) 		54.8
(-2.7) 		929
(3) 		924
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191626_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16811
Sequence Type Exemplar sequence
Representative Public ID C25B8.4 NCBI
Target Description C25B8.4 /REP_DB=WormBase Gene ID /WP=CE27087 /TR=Q18146 /GB=AAK39193.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=asialoglycoprotein receptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029256(11), NM_001029257(11), NM_001029258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029256 NCBI Caenorhabditis elegans C25B8.4a (C25B8.4) mRNA, complete cds. 11/11 None
NM_001029257 NCBI Caenorhabditis elegans C25B8.4b (C25B8.4) mRNA, complete cds. 11/11 None
NM_001029258 NCBI Caenorhabditis elegans C25B8.4c (C25B8.4) mRNA, complete cds. 11/11 None
GENEFINDER00000010953 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6616929:6618784:-1 11/11 None
SNAP00000010940 ENSEMBL cdna:SNAP chromosome:CEL140:X:6617509:6618784:-1 11/11 None
C25B8.4a ENSEMBL cdna:known chromosome:CEL140:X:6617396:6622794:-1 gene:C25B8.4 11/11 None
C25B8.4b ENSEMBL cdna:known chromosome:CEL140:X:6617509:6618799:-1 gene:C25B8.4 11/11 None
C25B8.4c ENSEMBL cdna:known chromosome:CEL140:X:6617777:6622831:-1 gene:C25B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6617508-6618826(-) 100.0 100.0
Public Domain and Genome References
Ensembl C25B8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68953 Hypothetical protein C25B8.4b [Caenorhabditis elegans] ref|NP_001024428.1| C25B8.4b [Caenorhabditis elegans] 1.0E-149
blast T34115 hypothetical protein C25B8.4 - Caenorhabditis elegans 1.0E-149
blast AAP68953 Hypothetical protein C25B8.4b [Caenorhabditis elegans] ref|NP_001024428.1| C25B8.4b [Caenorhabditis elegans] 1.0E-145
blast T34115 hypothetical protein C25B8.4 - Caenorhabditis elegans 1.0E-145
blast AAK39193 Hypothetical protein C25B8.4a [Caenorhabditis elegans] ref|NP_001024427.1| C25B8.4a [Caenorhabditis elegans] 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 6.5E-6
Pfam IPR001304 EMBL-EBI C-type lectin 6.5E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024427.1 1 7-24
NP_001024428.1 1 38-60
NP_001024429.1 1 7-24
C25B8.4a 1 7-24
C25B8.4b 1 38-60
C25B8.4c 1 7-24
GENEFINDER00000010953 1 38-60
SNAP00000010940 1 38-60
Sequence
Target Sequence 
>C. ELEGANS:191626_S_AT
tcttcaaactcgttctactcgtagctgccgtgggatttgtatcaactcggtttgctcaag
tcaaactcttcaactggagctacaaggattttggaaccaacgccttcactgatatttccc
ttgaccaacgtcaacactaccacgattttccaactggaacatgcccggacggatgggttc
gcttctcggactcgtgctactggatagaacagcacaagcaaagctttgctgaggctgaga
aacggtgctatgagaaaaacgcgacacttttcgtggtcaactcacaggatgaatgggatg
ccgtccgtgagcatttcccacaaaccggttacacctggattggtcttgttcgtttcaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCAAACTCGTTCTACTCGTAGC 557 615 173 Antisense
TACTCGTAGCTGCCGTGGGATTTGT 678 641 188 Antisense
GTATCAACTCGGTTTGCTCAAGTCA 655 453 211 Antisense
GGATTTTGGAACCAACGCCTTCACT 421 507 258 Antisense
TGATATTTCCCTTGACCAACGTCAA 268 559 282 Antisense
ACCAACGTCAACACTACCACGATTT 453 53 296 Antisense
ACATGCCCGGACGGATGGGTTCGCT 627 105 331 Antisense
AACGCGACACTTTTCGTGGTCAACT 152 145 430 Antisense
GATGAATGGGATGCCGTCCGTGAGC 662 411 460 Antisense
TCCCACAAACCGGTTACACCTGGAT 229 597 488 Antisense
TGGATTGGTCTTGTTCGTTTCACCC 75 549 508 Antisense
Sequence Source Affymetrix Proprietary Database