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[191624_at] acyl-CoA-binding protein

Description F47B10.7 /REP_DB=WormBase Gene ID /WP=CE03357 /TR=SW:Q20507 /GB=CAA91987.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA-binding protein
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 22      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 23      6grp_total > 22      4grp_total > 57      6grp_highest_sub > De      6grp_cgc > 61      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Hat      6grp_rule_based > S1      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3198
1 2 3 4 range
A 1005.4
(-1.4)
P 		2975.2
(2.9)
P 		3031.6
(3)
P 		276.8
(-3)
P 		2755
B 916
(-2)
P 		3213.8
(2.8)
P 		3288.6
(3)
P 		426.8
(-3)
P 		2862
C 1281.6
(-1.2)
P 		3131.5
(2.3)
P 		3475.2
(3)
P 		328
(-3)
P 		3147
avr 1067.7
(-1.5) 		3106.8
(2.7) 		3265.1
(3) 		343.9
(-3) 		2921

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2131
1 2 3 4 5 6 range
A 2046.1
(0.9)
P 		2484.6
(2.1)
P 		2800.4
(3)
P 		2041.1
(0.9)
P 		1235.1
(-1.4)
P 		676.6
(-3)
P 		2124
B 2677
(2.6)
P 		2724.6
(2.8)
P 		2807.5
(3)
P 		1578.8
(-0.7)
P 		1549.5
(-0.8)
P 		799.2
(-3)
P 		2008
C 2706.7
(3)
P 		2201.1
(1.3)
P 		1785.3
(-0.2)
P 		1661.8
(-0.6)
P 		1462.3
(-1.3)
P 		968.9
(-3)
P 		1738
avr 2476.6
(3) 		2470.1
(3) 		2464.4
(3) 		1760.6
(0.4) 		1415.6
(-0.8) 		814.9
(-3) 		1662
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1171
1 2 3 4 range
A 366.1
(-0.4)
P 		645.8
(1.8)
P 		792.5
(3)
P 		40.5
(-3)
P 		752
B 292.1
(-1.3)
P 		793.7
(3)
P 		762.1
(2.7)
P 		90.9
(-3)
P 		703
C 424.3
(-1.1)
P 		900.3
(1.4)
P 		1211.2
(3)
P 		55.3
(-3)
P 		1156
avr 360.8
(-0.9) 		779.9
(2) 		921.9
(3) 		62.2
(-3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 839
1 2 3 4 5 6 range
A 377.2
(-1.2)
P 		883.6
(3)
P 		609.9
(0.7)
P 		517.7
(-0.1)
P 		372.7
(-1.3)
P 		164.7
(-3)
P 		719
B 931.5
(3)
P 		906.9
(2.8)
P 		681.7
(0.6)
P 		418.2
(-1.9)
P 		629.6
(0.1)
P 		298
(-3)
P 		634
C 1003.3
(3)
P 		671.6
(0.1)
P 		454.4
(-1.9)
P 		334.2
(-2.9)
P 		473.2
(-1.7)
P 		324.4
(-3)
P 		679
avr 770.7
(2.5) 		820.7
(3) 		582
(0.4) 		423.4
(-1.3) 		491.8
(-0.5) 		262.4
(-3) 		558
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191624_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16786
Sequence Type Exemplar sequence
Representative Public ID F47B10.7 NCBI
Target Description F47B10.7 /REP_DB=WormBase Gene ID /WP=CE03357 /TR=SW:Q20507 /GB=CAA91987.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation /DEF=acyl-CoA-binding protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077421
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077421 NCBI Caenorhabditis elegans Acyl-Coenzyme A Binding Protein family member (acbp-3) (acbp-3) mRNA, complete cds. None
GENEFINDER00000040458 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10903204:10904909:1 None
SNAP00000040448 ENSEMBL cdna:SNAP chromosome:CEL140:X:10903204:10904909:1 None
F47B10.7.2 ENSEMBL cdna:known chromosome:CEL140:X:10903199:10904982:1 gene:F47B10.7 None
F47B10.7.1 ENSEMBL cdna:known chromosome:CEL140:X:10903201:10905001:1 gene:F47B10.7 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10903203-10904909(+) 100.0 100.0
Public Domain and Genome References
Gene Title acyl-CoA-binding protein
Gene Symbol acbp-3
Ensembl F47B10.7
Entrez Gene 181281 Entrez gene
SwissProt Q20507 EMBL-EBI
WormBase CE32423 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
62 acyl-CoA binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91987 Hypothetical protein F47B10.7 [Caenorhabditis elegans] ref|NP_509822.2| Acyl-Coenzyme A Binding Protein family member (acbp-3) [Caenorhabditis elegans] sp|Q20507|YAI7_CAEEL Hypothetical protein F47B10.7 in chromosome X 3.0E-60
blast CAE70798 Hypothetical protein CBG17558 [Caenorhabditis briggsae] 1.0E-57
Protein Domains
Database ID Description E-Value
Pfam IPR000582 EMBL-EBI Acyl-coA-binding protein, ACBP 9.3E-55
Sequence
Target Sequence 
>C. ELEGANS:191624_AT
agttcgacgctgctgtggaaatcatccagaaacttccaaaaacaggaccagttgccacca
gcaatgatcagaagcttaccttttactctttgttcaaacaggcttctatcggagatgtga
acaccgatagaccaggaattttctccatcatcgagagaaagaagtgggactcatggaaag
agctcgaaggagtgtctcaagatgaagctaaagagcgttatatcaaggctctaaacgaca
tgtttgacaaaatcgccgaggtatgtgaatgggtcttgtcggcaaacgaacttgatgttg
ccgcttggcttgaacaaattgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTCGACGCTGCTGTGGAAATCAT 656 63 29 Antisense
GGACCAGTTGCCACCAGCAATGATC 255 523 73 Antisense
GATCAGAAGCTTACCTTTTACTCTT 516 421 94 Antisense
TACCTTTTACTCTTTGTTCAAACAG 208 649 105 Antisense
GTTCAAACAGGCTTCTATCGGAGAT 570 445 120 Antisense
GACCAGGAATTTTCTCCATCATCGA 665 383 158 Antisense
ATATCAAGGCTCTAAACGACATGTT 617 19 248 Antisense
ATCGCCGAGGTATGTGAATGGGTCT 119 37 280 Antisense
GAATGGGTCTTGTCGGCAAACGAAC 627 329 295 Antisense
AACGAACTTGATGTTGCCGCTTGGC 352 141 313 Antisense
GCCGCTTGGCTTGAACAAATTGACC 23 285 328 Antisense
Sequence Source Affymetrix Proprietary Database