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[191623_at] UDP-glucuronosyltransferase

Description T03D3.1 /REP_DB=WormBase Gene ID /WP=CE13068 /TR=O16988 /GB=AAG24186.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 96      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 92      6grp_total > 86      4grp_total > 09      6grp_highest_sub > In      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 385
1 2 3 4 range
A 125.7
(-2.5)
P 		100
(-3)
P 		150
(-2.1)
P 		433.9
(3)
P 		334
B 98.1
(-3)
P 		161
(-1.7)
P 		165.5
(-1.6)
P 		397.6
(3)
P 		300
C 56.3
(-3)
P 		126.2
(-1.9)
P 		126.9
(-1.9)
P 		441.6
(3)
P 		385
avr 93.4
(-3) 		129.1
(-2.4) 		147.5
(-2) 		424.4
(3) 		331

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 365
1 2 3 4 5 6 range
A 172.8
(-3)
P 		190.4
(-2.6)
P 		293.9
(-0.1)
P 		258.4
(-1)
P 		339.1
(1)
P 		423.8
(3)
P 		251
B 164.6
(-3)
P 		194.8
(-2.3)
P 		315.8
(0.3)
P 		302.3
(-0)
P 		368.8
(1.4)
P 		443.3
(3)
P 		279
C 141.8
(-3)
P 		203.8
(-2)
P 		247.2
(-1.3)
P 		259.3
(-1.1)
P 		308
(-0.3)
P 		506.6
(3)
P 		365
avr 159.7
(-3) 		196.3
(-2.3) 		285.6
(-0.5) 		273.3
(-0.7) 		338.6
(0.6) 		457.9
(3) 		298
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 45.8
(0.5)
P 		21.7
(-3)
P 		39.2
(-0.5)
P 		63.5
(3)
P 		42
B 31.3
(-3)
P 		39.8
(-2)
P 		38.4
(-2.2)
P 		84.7
(3)
P 		53
C 18.6
(-3)
P 		36.3
(-1.1)
P 		44.2
(-0.3)
P 		74.5
(3)
P 		56
avr 31.9
(-3) 		32.6
(-2.9) 		40.6
(-1.8) 		74.2
(3) 		42

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 31.9
(-3)
P 		67.7
(0)
P 		64
(-0.3)
P 		65.5
(-0.2)
P 		102.3
(2.9)
P 		103.2
(3)
P 		71
B 57.3
(-3)
P 		64.8
(-2.6)
P 		76.7
(-1.9)
P 		80.1
(-1.7)
P 		149.8
(2.1)
P 		165.3
(3)
P 		108
C 52.6
(-3)
P 		62.2
(-2.5)
P 		62.9
(-2.4)
P 		52.1
(-3)
P 		99.7
(-0.6)
P 		169.6
(3)
P 		118
avr 47.3
(-3) 		64.9
(-1.9) 		67.9
(-1.7) 		65.9
(-1.9) 		117.3
(1.3) 		146
(3) 		99
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191623_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15693
Sequence Type Exemplar sequence
Representative Public ID T03D3.1 NCBI
Target Description T03D3.1 /REP_DB=WormBase Gene ID /WP=CE13068 /TR=O16988 /GB=AAG24186.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071370 NCBI Caenorhabditis elegans T03D3.1 (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 None
SNAP00000008137 ENSEMBL cdna:SNAP chromosome:CEL140:V:2849508:2851846:1 11/11 None
GENEFINDER00000008146 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2849192:2852089:1 10/11 None
T03D3.1 ENSEMBL cdna:known chromosome:CEL140:V:2849179:2851846:1 gene:T03D3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2849191-2851846(+) 100.0 100.0
Public Domain and Genome References
Gene Title UDP-glucuronosyltransferase
Gene Symbol ugt-53
Ensembl T03D3.1
Entrez Gene 178744 Entrez gene
SwissProt O16988 EMBL-EBI
WormBase CE13068 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
16758 transferase activity, transferring hexosyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503771 T03D3.1 [Caenorhabditis elegans] gb|AAG24186.1| Hypothetical protein T03D3.1 [Caenorhabditis elegans] 0.0
blast CAE67527 Hypothetical protein CBG13049 [Caenorhabditis briggsae] 0.0
blast CAE70845 Hypothetical protein CBG17629 [Caenorhabditis briggsae] 1.0E-152
blast CAE70845 Hypothetical protein CBG17629 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 4.0E-24
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 7.1E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503771.1 2 5-27,480-502
T03D3.1 2 5-27,480-502
SNAP00000008137 1 365-387
GENEFINDER00000008146 1 5-27
Sequence
Target Sequence 
>C. ELEGANS:191623_AT
gagtggttgccacaaaccgaacttctccatgataatcgtgttaaactattcatcagtcat
atgggcttaaattcgtacctggagactgcaaccgcaggagttcctgttctgtcaatccca
ctttttgccgatcaacaaaataatgcacagaatacaagagatcgtggaatgggtctctta
cttgatcgagacaaattgacaaccaaaaacattgaatccgctttgcacgaacttcttgaa
aacccgaaatacctttcaaatgcgagatcgatttcaaagatgattctggagaaaccggat
aaggcgaacgacacatttattcattggttggagtttacagcgagaaatcctggtctggga
agagtgctgaaactacccggagctgagctgagcccgttttattattactgcggagatatt
ttattgctggttttttgtatactttttattattcttcacactgttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTGGTTGCCACAAACCGAACTTC 486 331 1051 Antisense
ACCGAACTTCTCCATGATAATCGTG 499 89 1066 Antisense
AATTCGTACCTGGAGACTGCAACCG 447 169 1120 Antisense
GCAACCGCAGGAGTTCCTGTTCTGT 337 319 1138 Antisense
GTGGAATGGGTCTCTTACTTGATCG 517 491 1214 Antisense
ACATTGAATCCGCTTTGCACGAACT 51 105 1259 Antisense
TGCACGAACTTCTTGAAAACCCGAA 547 575 1274 Antisense
TACAGCGAGAAATCCTGGTCTGGGA 359 643 1386 Antisense
TGAAACTACCCGGAGCTGAGCTGAG 173 573 1418 Antisense
CTGAGCTGAGCCCGTTTTATTATTA 152 239 1433 Antisense
TTTTTATTATTCTTCACACTGTTCT 617 675 1493 Antisense
Sequence Source Affymetrix Proprietary Database