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[191620_at] salt-stress induced peptide

Description C04G6.4 /REP_DB=WormBase Gene ID /WP=CE06765 /TR=Q17636 /GB=AAA98010.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=salt-stress induced peptide
Cluster 6grp_highest_10_10 > 37      6grp_high1_10_10 > 73      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 72      6grp_total > 73      4grp_total > 52      6grp_highest_sub > 03_04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 417
(-0.2)
P 		554.2
(3)
P 		363.6
(-1.4)
P 		295.2
(-3)
P 		259
B 409.2
(3)
P 		336.9
(-1.2)
P 		322.1
(-2.1)
P 		306.1
(-3)
P 		103
C 418.8
(-0.5)
P 		399.8
(-1.1)
P 		531.3
(3)
P 		339.3
(-3)
P 		192
avr 415
(2.2) 		430.3
(3) 		405.7
(1.7) 		313.5
(-3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 385
1 2 3 4 5 6 range
A 432.2
(-0.4)
P 		355.2
(-3)
P 		445.7
(0)
P 		535.6
(3)
P 		445.4
(-0)
P 		443.9
(-0)
P 		180
B 412
(0.4)
P 		270.3
(-3)
P 		469.3
(1.7)
P 		523.8
(3)
P 		439.9
(1)
P 		443.3
(1.1)
P 		254
C 354
(-2.3)
P 		316.9
(-3)
P 		655
(3)
P 		372.5
(-2)
P 		491.2
(0.1)
P 		363.3
(-2.2)
P 		338
avr 399.4
(-0.6) 		314.1
(-3) 		523.3
(3) 		477.3
(1.7) 		458.8
(1.2) 		416.8
(-0.1) 		209
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 151.8
(3)
P 		120.3
(1.3)
P 		95.1
(-0.1)
P 		43.2
(-3)
P 		109
B 130.5
(3)
P 		83.2
(-1.3)
P 		74.6
(-2.1)
P 		65.2
(-3)
P 		65
C 138.6
(0.8)
P 		114.9
(-0.3)
P 		185.2
(3)
P 		57.2
(-3)
P 		128
avr 140.3
(3) 		106.1
(0.6) 		118.3
(1.4) 		55.2
(-3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 79.7
(-3)
P 		126.3
(2)
P 		97.1
(-1.1)
P 		135.8
(3)
P 		134.4
(2.9)
P 		108.1
(0)
P 		56
B 143.4
(0.6)
P 		90
(-3)
P 		114
(-1.4)
P 		138.7
(0.3)
P 		178.7
(3)
P 		165.3
(2.1)
P 		89
C 131.2
(0.7)
P 		96.7
(-1.6)
P 		166.7
(3)
P 		74.9
(-3)
P 		158.9
(2.5)
P 		121.6
(0.1)
P 		92
avr 118.1
(-1.4) 		104.3
(-3) 		125.9
(-0.6) 		116.5
(-1.6) 		157.3
(3) 		131.7
(0.1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191620_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5567
Sequence Type Exemplar sequence
Representative Public ID C04G6.4 NCBI
Target Description C04G6.4 /REP_DB=WormBase Gene ID /WP=CE06765 /TR=Q17636 /GB=AAA98010.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation /DEF=salt-stress induced peptide
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062537(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062537 NCBI Caenorhabditis elegans C04G6.4 (C04G6.4) mRNA, complete cds. 9/11 None
SNAP00000008305 ENSEMBL cdna:SNAP chromosome:CEL140:II:5081691:5083416:-1 9/11 None
C04G6.4 ENSEMBL cdna:known chromosome:CEL140:II:5081479:5083424:-1 gene:C04G6.4 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008322 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5081688-5083414(-) 96.1 100.0
Public Domain and Genome References
Gene Title salt-stress induced peptide
Ensembl C04G6.4
Entrez Gene 182237 Entrez gene
SwissProt Q17636 EMBL-EBI
WormBase CE32112 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98010 Hypothetical protein C04G6.4 [Caenorhabditis elegans] ref|NP_494938.2| C04G6.4 [Caenorhabditis elegans] 0.0
blast CAE59038 Hypothetical protein CBG02319 [Caenorhabditis briggsae] 1.0E-137
blast XP_397072 PREDICTED: similar to ENSANGP00000012325 [Apis mellifera] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:191620_AT
catggcgtgacgcacacttgtttgtattttacaaaaatcgtcgcgtcgagaccggatacc
attgaattcgccttattcaactgtgacgctgatttgttaaccgtcgcttctgatgcattc
acgaaatccggagccatggcaatctgtcggggactcacgtccgttatcgcaaacttcagg
ccattagtagctggtgaagagaaggctcgcaagatgtgtgagataaaagtggaagctgca
cgaaaaacgaataaagcaaaagaagatgctgctgttgttgtgattcaaccatttttaatg
gagatttctggaagatattactcaacatgcaaaatagttctacatcatgaatcgaaatat
tttgatgcgatttcacagcttttagaaattccatccactcttgtagaagtgattcaacga
gccgccaaatctgaaggccttccagatgatgaattttccacatcggtgacacaagctatt
aaaaatgtttacaagacatctgttaccacgtgggagccgggaagctttgctccgtacgac
tccaaagagcttctctcaattgcattcgcgtcagtttcgcaacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGGCGTGACGCACACTTGTTTGT 341 205 706 Antisense
GAGACCGGATACCATTGAATTCGCC 553 393 753 Antisense
ATTCGCCTTATTCAACTGTGACGCT 651 7 771 Antisense
TTAACCGTCGCTTCTGATGCATTCA 237 685 802 Antisense
TCCGGAGCCATGGCAATCTGTCGGG 208 591 832 Antisense
GAAATTCCATCCACTCTTGTAGAAG 422 363 1090 Antisense
GAGCCGCCAAATCTGAAGGCCTTCC 115 387 1124 Antisense
AAGACATCTGTTACCACGTGGGAGC 482 153 1198 Antisense
GGAGCCGGGAAGCTTTGCTCCGTAC 632 521 1218 Antisense
GTACGACTCCAAAGAGCTTCTCTCA 358 459 1239 Antisense
TGCATTCGCGTCAGTTTCGCAACAG 581 579 1266 Antisense
Sequence Source Affymetrix Proprietary Database