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[191619_at] 7TM chemoreceptor, str family

Description C18B10.7 /REP_DB=WormBase Gene ID /WP=CE25782 /GEN=str-190 /TR=P91070 /GB=AAK18893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 49      4grp_total > 09      6grp_cgc > 07      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 25.7
(-3)
A 		38.5
(0.3)
A 		36
(-0.4)
A 		49.1
(3)
A 		23
B 32.1
(-1.8)
A 		40.5
(-0.6)
A 		24.1
(-3)
A 		64.3
(3)
M 		40
C 21.9
(-1.5)
A 		5.1
(-3)
A 		30.7
(-0.7)
A 		72.2
(3)
P 		67
avr 26.6
(-3) 		28
(-2.8) 		30.3
(-2.4) 		61.9
(3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 43.1
(0.1)
A 		22.7
(-3)
A 		62.3
(3)
M 		46.9
(0.7)
A 		37.4
(-0.8)
A 		42.6
(0)
A 		40
B 41
(2.7)
A 		9.1
(-2)
A 		23.2
(0.1)
A 		2.3
(-3)
A 		43
(3)
A 		32.1
(1.4)
A 		41
C 20.2
(-1)
A 		48.5
(3)
A 		10.9
(-2.3)
A 		5.6
(-3)
A 		20.4
(-0.9)
A 		33.5
(0.9)
A 		43
avr 34.8
(2.6) 		26.8
(-0.1) 		32.1
(1.7) 		18.3
(-3) 		33.6
(2.2) 		36.1
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 9.4
(3)
A 		8.4
(0.3)
A 		9.4
(3)
A 		7.2
(-3)
A 		2
B 10.2
(0.4)
A 		10
(0.3)
A 		5.6
(-3)
A 		13.7
(3)
M 		8
C 7.3
(0.3)
A 		1.5
(-3)
A 		10.7
(2.2)
A 		12.2
(3)
P 		11
avr 9
(0.3) 		6.6
(-3) 		8.6
(-0.3) 		11
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.9
(-3)
A 		8.1
(-2.8)
A 		13.6
(3)
M 		11.9
(1.2)
A 		11.3
(0.6)
A 		10.4
(-0.4)
A 		6
B 14.3
(1.9)
A 		3
(-2.1)
A 		5.6
(-1.2)
A 		0.6
(-3)
A 		17.5
(3)
A 		12
(1)
A 		17
C 7.5
(-0.2)
A 		14.8
(3)
A 		2.8
(-2.3)
A 		1.1
(-3)
A 		6.6
(-0.6)
A 		11.2
(1.4)
A 		14
avr 9.9
(1.4) 		8.6
(0.4) 		7.3
(-0.7) 		4.5
(-3) 		11.8
(3) 		11.2
(2.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191619_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11808
Sequence Type Exemplar sequence
Representative Public ID C18B10.7 NCBI
Target Description C18B10.7 /REP_DB=WormBase Gene ID /WP=CE25782 /GEN=str-190 /TR=P91070 /GB=AAK18893.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072522(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072522 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-190) (str-190) mRNA, complete cds. 11/11 None
GENEFINDER00000031949 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7479882:7480988:-1 11/11 None
C18B10.7 ENSEMBL cdna:known chromosome:CEL140:V:7479882:7481096:-1 gene:C18B10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031942 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7479882-7481097(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-190
Ensembl C18B10.7
Entrez Gene 192026 Entrez gene
SwissProt P91070 EMBL-EBI
WormBase CE25782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18893 Seven tm receptor protein 190 [Caenorhabditis elegans] ref|NP_504923.1| Seven TM Receptor family member (str-190) [Caenorhabditis elegans] 0.0
blast AAK18893 Seven tm receptor protein 190 [Caenorhabditis elegans] ref|NP_504923.1| Seven TM Receptor family member (str-190) [Caenorhabditis elegans] 1.0E-178
blast A89103 protein C18B10.7 [imported] - Caenorhabditis elegans 1.0E-169
blast A89103 protein C18B10.7 [imported] - Caenorhabditis elegans 1.0E-147
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 1.0E-122
blast CAE72239 Hypothetical protein CBG19356 [Caenorhabditis briggsae] 1.0E-107
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504923.1 7 5-24,46-68,83-105,125-147,198-220,241-263,278-299
C18B10.7 7 5-24,46-68,83-105,125-147,198-220,241-263,278-299
GENEFINDER00000031949 5 47-69,89-111,162-184,205-227,242-263
Sequence
Target Sequence 
>C. ELEGANS:191619_AT
tcaacctacctgcatggatcggagtatgtcagacatcgttcatggtgagctcttcactga
tgtgcgtatttatattcggtgttttatgttataaacgtctgtctaacaccctatctatag
tatcggacgctgccaacaatttacaaaaacaattattttattcattagtactacagactc
taattccacttgttctaatgcactttccaatcacgatattttttattggacctatgctta
ccctggatactgatttcacaacatatgttgtactgaacacaattataatgtatccagcaa
ttgatccacttccaaactttatcataattaaaagctatcgagaatcagtgaaagcttgtg
ttcgaactgtgttatttctgggtccaagcaattctcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCTACCTGCATGGATCGGAGT 252 629 581 Antisense
GACATCGTTCATGGTGAGCTCTTCA 224 369 612 Antisense
GTGAGCTCTTCACTGATGTGCGTAT 277 483 625 Antisense
ATAAACGTCTGTCTAACACCCTATC 161 13 671 Antisense
GTATCGGACGCTGCCAACAATTTAC 665 451 700 Antisense
AGTACTACAGACTCTAATTCCACTT 195 61 747 Antisense
AATTCCACTTGTTCTAATGCACTTT 584 177 762 Antisense
AATGCACTTTCCAATCACGATATTT 452 165 777 Antisense
TTATTGGACCTATGCTTACCCTGGA 52 587 803 Antisense
GCTTACCCTGGATACTGATTTCACA 440 305 816 Antisense
TTCTGGGTCCAAGCAATTCTCAAGT 561 693 956 Antisense
Sequence Source Affymetrix Proprietary Database