[Home] | [Total List]

[191618_s_at] 40S ribosomal protein S5

Description T05E11.1 /REP_DB=WormBase Gene ID /WP=CE06360 /TR=SW:P49041 /GB=CAA92971.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=40S ribosomal protein S5
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 08      6grp_total > 31      4grp_total > 17      6grp_highest_sub > 02      6grp_cgc > 71      6grp_high1_sub > 02_03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16468
1 2 3 4 range
A 24731.6
(-3)
P 		33179.4
(1.5)
P 		29705.7
(-0.3)
P 		35972.6
(3)
P 		11241
B 25070.6
(-3)
P 		25348.5
(-2.8)
P 		29227.8
(0.2)
P 		32909.6
(3)
P 		7839
C 21828.1
(-3)
P 		23680.9
(-2.3)
P 		23795.9
(-2.3)
P 		38296.5
(3)
P 		16468
avr 23876.8
(-3) 		27402.9
(-1.2) 		27576.5
(-1.1) 		35726.2
(3) 		11849

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7425
1 2 3 4 5 6 range
A 21504.3
(1.9)
P 		18794.8
(-1.4)
P 		22421.4
(3)
P 		19734.5
(-0.2)
P 		17445.1
(-3)
P 		18062.1
(-2.3)
P 		4976
B 19616.7
(0.4)
P 		22256.7
(3)
P 		22102.4
(2.9)
P 		17590.2
(-1.5)
P 		17305.9
(-1.8)
P 		16053.2
(-3)
P 		6204
C 18777.5
(-0.5)
P 		23053.6
(3)
P 		20081.1
(0.6)
P 		20121.4
(0.6)
P 		18733.5
(-0.5)
P 		15628.7
(-3)
P 		7425
avr 19966.2
(1.1) 		21368.4
(2.8) 		21535
(3) 		19148.7
(0.1) 		17828.2
(-1.5) 		16581.3
(-3) 		4954
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3739
1 2 3 4 range
A 9004.8
(3)
P 		7202.4
(0.1)
P 		7765.6
(1)
P 		5265.7
(-3)
P 		3739
B 7994.8
(3)
P 		6260.5
(-3)
P 		6772.7
(-1.2)
P 		7013
(-0.4)
P 		1734
C 7225.7
(-0.5)
P 		6808.4
(-1.9)
P 		8293.6
(3)
P 		6457.4
(-3)
P 		1836
avr 8075.1
(3) 		6757.1
(-1.3) 		7610.6
(1.5) 		6245.4
(-3) 		1830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3444
1 2 3 4 5 6 range
A 3964.2
(-3)
P 		6684.4
(3)
P 		4882.9
(-1)
P 		5005.1
(-0.7)
P 		5264.2
(-0.1)
P 		4397.5
(-2)
P 		2720
B 6825.6
(1.7)
P 		7408.3
(3)
P 		5367.1
(-1.5)
P 		4659
(-3)
P 		7031.1
(2.2)
P 		5986.2
(-0.1)
P 		2749
C 6960
(2.9)
P 		7034.4
(3)
P 		5111
(-0.9)
P 		4046.4
(-3)
P 		6061.9
(1)
P 		5231.8
(-0.6)
P 		2988
avr 5916.6
(0.3) 		7042.4
(3) 		5120.3
(-1.7) 		4570.2
(-3) 		6119.1
(0.8) 		5205.2
(-1.5) 		2472
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191618_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10217
Sequence Type Exemplar sequence
Representative Public ID T05E11.1 NCBI
Target Description T05E11.1 /REP_DB=WormBase Gene ID /WP=CE06360 /TR=SW:P49041 /GB=CAA92971.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=40S ribosomal protein S5
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069676(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069676 NCBI Caenorhabditis elegans Ribosomal Protein, Small subunit family member (rps-5) (rps-5) mRNA, complete cds. 11/11 A 
SNAP00000031860 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11110188:11111016:-1 11/11 None
GENEFINDER00000031866 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11110188:11111016:-1 11/11 None
T05E11.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:11110074:11111017:-1 gene:T05E11.1 11/11 None
T05E11.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:11110074:11111024:-1 gene:T05E11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11110193-11111022(-) 100.0 100.0
Public Domain and Genome References
Gene Title 40S ribosomal protein S5
Gene Symbol rps-5
Ensembl T05E11.1
Entrez Gene 178012 Entrez gene
SwissProt P49041 EMBL-EBI
WormBase CE06360 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:12794_AT 40S ribosomal protein S5 (RPS5A) at
ATH1-121501:265963_S_AT 40S ribosomal protein S5 (RPS5A) at
CANINE:1592300_X_AT similar to ribosomal protein S5 cfa
CANINE:1585704_X_AT similar to ribosomal protein S5 cfa
CANINE:1585721_X_AT similar to ribosomal protein S5 cfa
CANINE:1584772_X_AT similar to ribosomal protein S5 cfa
CANINE:1584422_X_AT similar to ribosomal protein S5 cfa
CANINE:1585012_X_AT similar to ribosomal protein S5 cfa
CANINE:1585225_X_AT similar to ribosomal protein S5 cfa
CANINE:1584734_X_AT similar to ribosomal protein S5 cfa
CANINE:1584643_X_AT similar to ribosomal protein S5 cfa
CANINE:1584321_X_AT similar to ribosomal protein S5 cfa
CANINE:1583795_X_AT similar to ribosomal protein S5 cfa
CANINE_2:CFA.787.1.A1_S_AT similar to ribosomal protein S5 cfa
DROSOPHILA_2:1630031_AT Ribosomal protein S5a dm
DROSGENOME1:153285_AT Ribosomal protein S5a dm
HU35KSUBB:RC_AA075580_F_AT ribosomal protein S5 hs
HU35KSUBD:RC_H93652_F_AT ribosomal protein S5 hs
HUGENEFL:U14970_AT ribosomal protein S5 hs
U133_X3P:G4506728_3P_AT ribosomal protein S5 hs
HG-U95AV2:32437_AT ribosomal protein S5 hs
HG-U95C:63954_AT ribosomal protein S5 hs
HG-U95C:63955_G_AT ribosomal protein S5 hs
PLASMODIUM_ANOPHELES:200024_AT ribosomal protein S5 hs
HG-U133_PLUS_2:200024_AT ribosomal protein S5 hs
HG-FOCUS:200024_AT ribosomal protein S5 hs
HG-U133A:200024_AT ribosomal protein S5 hs
HG-U133B:200024_AT ribosomal protein S5 hs
HG-U133A_2:200024_AT ribosomal protein S5 hs
U133_X3P:200024_AT ribosomal protein S5 hs
MOUSE430_2:1416054_AT ribosomal protein S5 mm
MOE430A:1416054_AT ribosomal protein S5 mm
MOUSE430A_2:1416054_AT ribosomal protein S5 mm
MU11KSUBA:U78085_S_AT ribosomal protein S5 mm
MG-U74AV2:99336_AT ribosomal protein S5 mm
MG-U74BV2:164610_F_AT ribosomal protein S5 mm
MU19KSUBB:TC27376_AT Ribosomal protein S5 (Rps5), mRNA mm
MU19KSUBB:TC30367_AT Ribosomal protein S5 (Rps5), mRNA mm
RG-U34A:X58465MRNA_G_AT ribosomal protein S5 rn
RG-U34A:X58465MRNA_AT ribosomal protein S5 rn
RAE230A:1398882_AT ribosomal protein S5 rn
RAT230_2:1398882_AT ribosomal protein S5 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
15935 small ribosomal subunit inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA92971 Hypothetical protein T05E11.1 [Caenorhabditis elegans] ref|NP_502077.1| Ribosomal Protein, Small subunit family member (rps-5) [Caenorhabditis elegans] sp|P49041|RS5_CAEEL 40S ribosomal protein S5 1.0E-114
blast CAE62003 Hypothetical protein CBG06011 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR000235 EMBL-EBI Ribosomal protein S7 2.7E-70
Sequence
Target Sequence 
>C. ELEGANS:191618_S_AT
ctggggatctgaaaacgtcgtcgccgacgccgctccggctaccgaagctccagaggttgc
tctcttcggaaaatggtcgctccagagcgtgaatgtatccgacatctcccttgtcgacta
cattccagttaaggagaagtccgccaagtaccttccacattcggctggacgcttccaagt
ccgccgtttccgcaaggccgcttgcccaatcgtcgaacgtctcgccaactccttgatgat
gcacggacgcaacaacggaaagaagcttatgaccgtcagaatcgtcaagcacgcctttga
gatcatctacttgctcaccggagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGGGATCTGAAAACGTCGTCGCC 313 239 24 Antisense
GCTACCGAAGCTCCAGAGGTTGCTC 45 301 61 Antisense
GAGGTTGCTCTCTTCGGAAAATGGT 194 403 76 Antisense
TTCGGAAAATGGTCGCTCCAGAGCG 10 693 88 Antisense
AGCGTGAATGTATCCGACATCTCCC 434 81 109 Antisense
CTTGTCGACTACATTCCAGTTAAGG 463 215 133 Antisense
TAAGGAGAAGTCCGCCAAGTACCTT 534 635 153 Antisense
GCCAACTCCTTGATGATGCACGGAC 57 279 247 Antisense
GACCGTCAGAATCGTCAAGCACGCC 197 383 294 Antisense
AAGCACGCCTTTGAGATCATCTACT 474 151 310 Antisense
ATCATCTACTTGCTCACCGGAGAGA 28 31 325 Antisense
Sequence Source Affymetrix Proprietary Database