[Home] | [Total List]

[191617_at]

Description T13H5.1 /REP_DB=WormBase Gene ID /WP=CE03652 /TR=Q21527 /GB=CAA91422.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster 6grp_highest_10_10 > 41      6grp_high1_10_10 > 03      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 41      6grp_total > 24      4grp_total > 38      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 593
1 2 3 4 range
A 945.4
(3)
P 		612.8
(-0.4)
P 		364.9
(-3)
P 		675.1
(0.2)
P 		581
B 941.8
(3)
P 		463.7
(-2.3)
P 		399.3
(-3)
P 		533.9
(-1.5)
P 		543
C 958.1
(3)
P 		445.8
(-2.9)
P 		439.8
(-3)
P 		578.3
(-1.4)
P 		518
avr 948.4
(3) 		507.4
(-1.8) 		401.3
(-3) 		595.8
(-0.9) 		547

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 637
1 2 3 4 5 6 range
A 1086.2
(3)
P 		847
(0.6)
P 		731.7
(-0.5)
P 		586.1
(-2)
P 		559.6
(-2.2)
P 		482.7
(-3)
P 		604
B 1019.6
(3)
P 		1000
(2.8)
P 		889.5
(1.5)
P 		562.6
(-2.3)
P 		505.2
(-3)
P 		579.6
(-2.1)
P 		514
C 929.2
(1)
P 		1119.6
(3)
P 		736.2
(-0.9)
P 		685.4
(-1.5)
P 		535.8
(-3)
P 		547.7
(-2.9)
P 		584
avr 1011.7
(3) 		988.9
(2.7) 		785.8
(0.2) 		611.4
(-2) 		533.5
(-3) 		536.7
(-3) 		478
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 344.2
(3)
P 		133
(-2.1)
P 		95.4
(-3)
P 		98.8
(-2.9)
P 		249
B 300.3
(3)
P 		114.5
(-2.4)
P 		92.5
(-3)
P 		113.8
(-2.4)
P 		208
C 317.2
(3)
P 		128.2
(-2.2)
P 		153.3
(-1.5)
P 		97.5
(-3)
P 		220
avr 320.6
(3) 		125.2
(-2.4) 		113.7
(-2.7) 		103.4
(-3) 		217

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 200.2
(-0.3)
P 		301.2
(3)
P 		159.3
(-1.6)
P 		148.6
(-2)
P 		168.9
(-1.3)
P 		117.5
(-3)
P 		184
B 354.8
(3)
P 		332.9
(2.4)
P 		216
(-1)
P 		149
(-3)
P 		205.3
(-1.4)
P 		216.1
(-1)
P 		206
C 344.4
(3)
P 		341.6
(2.9)
P 		187.4
(-1.6)
P 		137.8
(-3)
P 		173.4
(-2)
P 		183.3
(-1.7)
P 		207
avr 299.8
(2.2) 		325.2
(3) 		187.6
(-1.6) 		145.1
(-3) 		182.5
(-1.8) 		172.3
(-2.1) 		180
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2680
Sequence Type Exemplar sequence
Representative Public ID T13H5.1 NCBI
Target Description T13H5.1 /REP_DB=WormBase Gene ID /WP=CE03652 /TR=Q21527 /GB=CAA91422.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=protein-tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027176(10), NM_001027175(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027176 NCBI Caenorhabditis elegans T13H5.1b (T13H5.1) mRNA, complete cds. 10/11 None
NM_001027175 NCBI Caenorhabditis elegans T13H5.1a (T13H5.1) mRNA, complete cds. 10/11 None
SNAP00000015533 ENSEMBL cdna:SNAP chromosome:CEL140:II:8487869:8488785:-1 9/11 None
GENEFINDER00000015543 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:8487869:8492552:-1 11/11 None
T13H5.1b ENSEMBL cdna:known chromosome:CEL140:II:8487502:8505449:-1 gene:T13H5.1 10/11 A 
T13H5.1a ENSEMBL cdna:known chromosome:CEL140:II:8487869:8506576:-1 gene:T13H5.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8488014-8506521(-) 99.95 100.0
Public Domain and Genome References
Ensembl T13H5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH10782 Hypothetical protein T13H5.1b [Caenorhabditis elegans] emb|CAH04723.1| Hypothetical protein T13H5.1b [Caenorhabditis elegans] ref|NP_001022347.1| T13H5.1b [Caenorhabditis elegans] 0.0
blast CAA91422 Hypothetical protein T13H5.1a [Caenorhabditis elegans] emb|CAA91417.3| Hypothetical protein T13H5.1a [Caenorhabditis elegans] ref|NP_001022346.1| T13H5.1a [Caenorhabditis elegans] 0.0
blast CAE57628 Hypothetical protein CBG00613 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.2E-27
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.5E-86
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.8E-59
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.5E-86
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.8E-59
Sequence
Target Sequence 
>C. ELEGANS:191617_AT
ttccgccaatgaaggtcgaccctgagggtaagggggtgtcaaaactaacattcatgatca
gcgacatcatggccactggagcacaaaatcaacaaattgatgcagaagttcgaatttgtt
gcgttattcagaaatatttattgataaaccttaaaatgttttttgaggatgtcagaatgt
ggcctattgaaaacaaagtcccactgtcaacaactggcctcatagatgttatcaagatgg
ccagaagttggaggaaaagagcaccagatcgtccagaaaccaaaccaactattgtcatgt
cacataacggagtatcccgagttggtgtgtacattggagcaaacatatgcattgatcaaa
tggatattgaccatgaagttgacgtttttcatgcagtcaaaatgatgaggatcaatagac
cacagttgattgatatgaaggatgagtataaatatctttacgacgtgatgttgcattggt
acatgacaaatcccgactatcgaatctatgacaaagaagatagtgaagatacggacagtc
aaaaaacatctcgaccgccgtcaaatcgtcattcaatcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCGCCAATGAAGGTCGACCCTGA 479 695 1520 Antisense
TCAGCGACATCATGGCCACTGGAGC 415 623 1577 Antisense
AAAGTCCCACTGTCAACAACTGGCC 589 121 1714 Antisense
ACAACTGGCCTCATAGATGTTATCA 338 111 1729 Antisense
GAAAAGAGCACCAGATCGTCCAGAA 315 353 1773 Antisense
GATCGTCCAGAAACCAAACCAACTA 642 417 1786 Antisense
GTCATGTCACATAACGGAGTATCCC 408 467 1813 Antisense
GGAGTATCCCGAGTTGGTGTGTACA 180 517 1828 Antisense
TACGACGTGATGTTGCATTGGTACA 657 647 1978 Antisense
GGTACATGACAAATCCCGACTATCG 427 501 1997 Antisense
CGCCGTCAAATCGTCATTCAATCAA 448 257 2075 Antisense
Sequence Source Affymetrix Proprietary Database