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[191614_s_at] protein tyrosine phosphatase /// protein-tyrosine phosphatase

Description C29E6.3 /REP_DB=WormBase Gene ID /WP=CE17478 /TR=Q18301 /GB=CAA96607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster 6grp_total > 87      4grp_total > 02      6grp_cgc > 58      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 9.2
(-2.8)
A 		6.1
(-3)
A 		13.6
(-2.5)
A 		95.2
(3)
A 		89
B 7.7
(-2.5)
A 		6.9
(-2.6)
A 		3.7
(-3)
A 		53.1
(3)
A 		49
C 4.9
(-3)
A 		7.4
(-2.8)
A 		5.2
(-3)
A 		99.8
(3)
A 		95
avr 7.3
(-3) 		6.8
(-3) 		7.5
(-2.9) 		82.7
(3) 		76

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 158
1 2 3 4 5 6 range
A 2.2
(-3)
A 		5.6
(-2.9)
A 		7.5
(-2.8)
A 		46.7
(-1.3)
A 		81.8
(0)
A 		159.8
(3)
P 		158
B 4.4
(-3)
A 		6.4
(-2.9)
A 		6.2
(-2.9)
A 		20.1
(-2.4)
A 		84.7
(0.1)
A 		157.9
(3)
P 		154
C 8.4
(-3)
A 		28
(-2.2)
A 		10.6
(-2.9)
A 		44.6
(-1.6)
A 		56.6
(-1.1)
A 		158.8
(3)
P 		150
avr 5
(-3) 		13.3
(-2.7) 		8.1
(-2.9) 		37.1
(-1.7) 		74.4
(-0.3) 		158.8
(3) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 3.4
(-2)
A 		1.3
(-3)
A 		3.6
(-1.9)
A 		13.9
(3)
A 		13
B 2.5
(-2.1)
A 		1.7
(-2.5)
A 		0.9
(-3)
A 		11.3
(3)
A 		10
C 1.6
(-3)
A 		2.1
(-2.8)
A 		1.8
(-2.9)
A 		16.8
(3)
A 		15
avr 2.5
(-2.6) 		1.7
(-3) 		2.1
(-2.8) 		14
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 0.4
(-3)
A 		2
(-2.8)
A 		1.6
(-2.8)
A 		11.9
(-1.2)
A 		24.7
(0.8)
A 		38.9
(3)
P 		39
B 1.5
(-3)
A 		2.1
(-2.9)
A 		1.5
(-3)
A 		5.3
(-2.6)
A 		34.4
(0.4)
A 		58.9
(3)
P 		57
C 3.1
(-3)
A 		8.5
(-2.3)
A 		2.7
(-3)
A 		9
(-2.3)
A 		18.3
(-1.1)
A 		53.2
(3)
P 		51
avr 1.7
(-3) 		4.2
(-2.7) 		1.9
(-3) 		8.7
(-2.1) 		25.8
(-0) 		50.3
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191614_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10178
Sequence Type Exemplar sequence
Representative Public ID C29E6.3 NCBI
Target Description C29E6.3 /REP_DB=WormBase Gene ID /WP=CE17478 /TR=Q18301 /GB=CAA96607.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=protein tyrosine phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069850(11), NM_069799(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069850 NCBI Caenorhabditis elegans Protein PHosphatase family member (pph-2) (pph-2) mRNA, complete cds. 11/11 None
NM_069799 NCBI Caenorhabditis elegans ZK809.1 (ZK809.1) mRNA, complete cds. 11/11 None
SNAP00000002876 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11876213:11877701:-1 11/11 None
GENEFINDER00000002881 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11875981:11878242:-1 11/11 None
SNAP00000011179 ENSEMBL cdna:SNAP chromosome:CEL140:IV:11642126:11643679:1 11/11 None
GENEFINDER00000011191 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:11641036:11643679:1 11/11 None
ZK809.1 ENSEMBL cdna:known chromosome:CEL140:IV:11642072:11643676:1 gene:ZK809.1 11/11 None
C29E6.3 ENSEMBL cdna:known chromosome:CEL140:IV:11876213:11877701:-1 gene:C29E6.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11642131-11643614(+) 94.9 97.99
chrIV:11876218-11877707(-) 96.67 100.0
Public Domain and Genome References
Gene Title protein tyrosine phosphatase
protein-tyrosine phosphatase
Gene Symbol pph-2
Ensembl ZK809.1
C29E6.3
Entrez Gene 178119 Entrez gene
191427 Entrez gene
SwissProt Q18301 EMBL-EBI
Q23602 EMBL-EBI
WormBase CE17478 Wormbase
CE24741 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA96607 Hypothetical protein C29E6.3 [Caenorhabditis elegans] ref|NP_502251.1| Protein PHosphatase family member (pph-2) [Caenorhabditis elegans] 0.0
blast CAA92641 Hypothetical protein ZK809.1 [Caenorhabditis elegans] ref|NP_502200.1| ZK809.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.3E-42
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-41
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-41
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 7.3E-42
Sequence
Target Sequence 
>C. ELEGANS:191614_S_AT
tcaccaacccagcaatcgacaagctgttctgtcaggaatcgggagcatggctctatgcca
acggatttttcgtcaacacccgcaaagttgagaagaaggaaaatgcgaaagcagacatgt
ttgtcgttgaacttcttccagaaggttgctcgaatgctgtcatgtgtagtgtgtatcttc
atacatactggaagcctttgtttggacctgatcgattcggtgcacagatccgcgcagccc
atcaaattgctaagaatgagaacggaaactcaccaactgtcattgcttctgtgaatggtt
ctggacggaatgctgcgcttcttacgttggcagttgttgaggatcagttgactagaggaa
aggagccaaagataagcgaaatcgttcgcacgatccgtgagcaacgcccccagtccgttg
actcatacatccaatatgtatcactgtacatggcaaccaactggctgatcaaaacaaagc
tcccatctggtcatgaagtcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCACCAACCCAGCAATCGACAAGCT 349 625 722 Antisense
CGGGAGCATGGCTCTATGCCAACGG 602 243 761 Antisense
GAAGGTTGCTCGAATGCTGTCATGT 144 335 862 Antisense
GGAAGCCTTTGTTTGGACCTGATCG 153 531 911 Antisense
ACTCACCAACTGTCATTGCTTCTGT 360 101 989 Antisense
ATGGTTCTGGACGGAATGCTGCGCT 650 51 1016 Antisense
ATGCTGCGCTTCTTACGTTGGCAGT 186 41 1031 Antisense
ATCGTTCGCACGATCCGTGAGCAAC 476 35 1102 Antisense
CAGTCCGTTGACTCATACATCCAAT 433 207 1132 Antisense
GTATCACTGTACATGGCAACCAACT 87 447 1159 Antisense
AGCTCCCATCTGGTCATGAAGTCGT 235 81 1199 Antisense
Sequence Source Affymetrix Proprietary Database