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[191612_at] fatty acid transport protein

Description F28D1.9 /REP_DB=WormBase Gene ID /WP=CE05749 /TR=Q19878 /GB=CAA94602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=fatty acid transport protein
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 71      6grp_total > 81      4grp_total > 57      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 806
1 2 3 4 range
A 97.6
(-2.4)
P 		388.5
(0.4)
P 		652.9
(3)
P 		39
(-3)
A 		614
B 99.3
(-2.4)
P 		534.6
(0.9)
P 		822.4
(3)
P 		16.6
(-3)
A 		806
C 126.9
(-2.2)
P 		564.2
(1.3)
P 		775.7
(3)
P 		30.6
(-3)
A 		745
avr 107.9
(-2.3) 		495.8
(0.9) 		750.3
(3) 		28.7
(-3) 		722

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 396
1 2 3 4 5 6 range
A 216.8
(-2.1)
P 		477.8
(1.9)
P 		309.2
(-0.7)
P 		550.5
(3)
P 		385.6
(0.5)
P 		154.1
(-3)
P 		396
B 213.8
(-2.9)
P 		474.6
(3)
P 		302.9
(-0.9)
P 		474.8
(3)
P 		447.5
(2.4)
P 		207.8
(-3)
P 		267
C 205.6
(-2.2)
P 		435.7
(3)
P 		344.2
(0.9)
P 		386.8
(1.9)
P 		437.8
(3)
P 		167.6
(-3)
P 		270
avr 212.1
(-2.3) 		462.7
(2.8) 		318.8
(-0.1) 		470.7
(3) 		423.6
(2) 		176.5
(-3) 		294
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 267
1 2 3 4 range
A 35.6
(-1.9)
P 		84.3
(-0.1)
P 		170.7
(3)
P 		5.7
(-3)
A 		165
B 31.7
(-2.1)
P 		132
(1.1)
P 		190.6
(3)
P 		3.5
(-3)
A 		187
C 42
(-2.2)
P 		162.2
(0.6)
P 		270.4
(3)
P 		5.2
(-3)
A 		265
avr 36.4
(-2.1) 		126.2
(0.5) 		210.6
(3) 		4.8
(-3) 		206

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 40
(-2.9)
P 		169.9
(3)
P 		67.3
(-1.6)
P 		139.6
(1.6)
P 		116.3
(0.6)
P 		37.5
(-3)
P 		132
B 74.4
(-3)
P 		158
(1.7)
P 		73.6
(-3)
P 		125.8
(-0.1)
P 		181.8
(3)
P 		77.5
(-2.8)
P 		108
C 76.2
(-1.6)
P 		132.9
(2.4)
P 		87.6
(-0.8)
P 		77.8
(-1.5)
P 		141.7
(3)
P 		56.1
(-3)
P 		86
avr 63.5
(-2.6) 		153.6
(3) 		76.2
(-1.8) 		114.4
(0.6) 		146.6
(2.6) 		57
(-3) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9409
Sequence Type Exemplar sequence
Representative Public ID F28D1.9 NCBI
Target Description F28D1.9 /REP_DB=WormBase Gene ID /WP=CE05749 /TR=Q19878 /GB=CAA94602.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=fatty acid transport protein
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069966(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069966 NCBI Caenorhabditis elegans F28D1.9 (F28D1.9) mRNA, complete cds. 11/11 None
SNAP00000029700 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12392450:12396734:-1 11/11 None
GENEFINDER00000029708 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12392450:12396734:-1 11/11 None
F28D1.9 ENSEMBL cdna:known chromosome:CEL140:IV:12392100:12398675:-1 gene:F28D1.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12392455-12396740(-) 100.0 100.0
Public Domain and Genome References
Gene Title fatty acid transport protein
Ensembl F28D1.9
Entrez Gene 178190 Entrez gene
SwissProt Q19878 EMBL-EBI
WormBase CE05749 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.30704.1.S1_S_AT similar to solute carrier family 27 (fatty acid transporter), member 4 cfa
DROSOPHILA_2:1629869_S_AT Fatty acid (long chain) transport protein dm
DROSGENOME1:141619_AT Fatty acid (long chain) transport protein dm
CHICKEN:GGA.1737.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
CHICKEN:GGA.8457.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
CHICKEN:GGAAFFX.3079.1.S1_AT solute carrier family 27 (fatty acid transporter), member 4 gga
HU35KSUBA:RC_AA418394_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HU35KSUBD:RC_H16504_AT solute carrier family 27 (fatty acid transporter), member 4 hs
U133_X3P:HS.248953.0.S2_3P_X_AT solute carrier family 27 (fatty acid transporter), member 4 hs
U133_X3P:HS.248953.0.S2_3P_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U133_PLUS_2:225779_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U133B:225779_AT solute carrier family 27 (fatty acid transporter), member 4 hs
HG-U95C:61357_AT solute carrier family 27 (fatty acid transporter), member 4 hs
MG-U74AV2:97957_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOE430A:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOUSE430A_2:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MOUSE430_2:1424441_AT solute carrier family 27 (fatty acid transporter), member 4 mm
MU19KSUBB:TC31655_AT Solute carrier family 27 (fatty acid transporter), member 4, mRNA (cDNA clone MGC:28448 IMAGE:4158956) mm
RAE230A:1377123_AT solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAT230_2:1377123_AT solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAE230B:1381028_AT Solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
RAT230_2:1381028_AT Solute carrier family 27 (fatty acid transporter), member 4 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA94602 Hypothetical protein F28D1.9 [Caenorhabditis elegans] ref|NP_502367.1| F28D1.9 [Caenorhabditis elegans] 0.0
blast CAE59853 Hypothetical protein CBG03326 [Caenorhabditis briggsae] 0.0
blast AAA81698 Hypothetical protein D1009.1a [Caenorhabditis elegans] ref|NP_509509.1| D1009.1a [Caenorhabditis elegans] 1.0E-178
Protein Families
Method ID Description E-Value
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 1.0E-127
ec AC2L_HUMAN (Q9NUB1) Acetyl-coenzyme A synthetase 2-like, mitochondrial precursor (EC 6.2.1.1) (Acetate--CoA ligase 2) (Acetyl-CoA synthetase 2) 1.0E-128
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-67
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-19
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-67
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 2.2E-19
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502367.1 1 21-43
F28D1.9 1 21-43
SNAP00000029700 1 21-43
GENEFINDER00000029708 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:191612_AT
tctggagcaatggtgtcgacgatcagaaaaaataatccattattgcaattcgagggatat
ctgaataagaaggaaacgaataaaaagattatcagagatgtcttcgcaaagggagatagt
tgctttttgactggagatcttcttcattgggatcgtcttggttatgtatatttcaaggat
cgtactggagatactttccgttggaagggagagaatgtgtcgactactgaagtcgaggca
attcttcatccaattactggattgtctgatgcaactgtttatggtgtagaggttcctcaa
agagagggaagagttggaatggcgtcagttgttcgagttgtatcgcatgaggaagatgaa
actcaatttgttcatagagttggagcaagacttgcctcttcgcttaccagctacgcgatt
cctcagtttatgcgaatttgtcaggatgttgagaaaacaggtacattcaaacttgtgaag
acgaatctacaacgattaggtatcatggatgctccttcagattcaatttacatctacaat
tctgaaaatcgcaattttgtgccgttcgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGGAGCAATGGTGTCGACGATCA 409 607 1351 Antisense
GTTGCTTTTTGACTGGAGATCTTCT 358 439 1469 Antisense
TCTTCTTCATTGGGATCGTCTTGGT 322 617 1488 Antisense
GGATCGTACTGGAGATACTTTCCGT 241 503 1527 Antisense
GGGAGAGAATGTGTCGACTACTGAA 166 495 1557 Antisense
AAGTCGAGGCAATTCTTCATCCAAT 548 157 1580 Antisense
TGGAATGGCGTCAGTTGTTCGAGTT 360 545 1665 Antisense
AGCTACGCGATTCCTCAGTTTATGC 611 79 1759 Antisense
GATTAGGTATCATGGATGCTCCTTC 22 429 1844 Antisense
GGATGCTCCTTCAGATTCAATTTAC 114 513 1857 Antisense
AATCGCAATTTTGTGCCGTTCGACA 367 167 1897 Antisense
Sequence Source Affymetrix Proprietary Database