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[191610_s_at]

Description C49A9.8 /REP_DB=WormBase Gene ID /WP=CE16938 /TR=O44149 /GB=AAK29790.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 58      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 82      6grp_total > 47      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 335.7
(2.6)
P 		150.6
(-3)
P 		158.8
(-2.8)
P 		348.4
(3)
P 		198
B 284.4
(0.8)
P 		175.3
(-3)
P 		202.3
(-2.1)
P 		349.7
(3)
P 		174
C 349.6
(3)
P 		214.8
(-2.5)
P 		201.6
(-3)
P 		341.6
(2.7)
P 		148
avr 323.2
(2.2) 		180.2
(-3) 		187.6
(-2.7) 		346.6
(3) 		166

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 233
1 2 3 4 5 6 range
A 343.7
(-0.8)
P 		345
(-0.7)
P 		412.2
(3)
P 		304.6
(-3)
P 		331
(-1.5)
P 		345.4
(-0.7)
P 		108
B 468.4
(1.9)
P 		502.5
(3)
P 		320.5
(-3)
P 		336.2
(-2.5)
P 		364.5
(-1.5)
P 		474.8
(2.1)
P 		182
C 326.6
(-1.3)
P 		423.9
(1.6)
P 		270
(-3)
P 		331
(-1.2)
P 		343.1
(-0.8)
P 		471.3
(3)
P 		201
avr 379.6
(0.1) 		423.8
(2.6) 		334.2
(-2.4) 		323.9
(-3) 		346.2
(-1.7) 		430.5
(3) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 122.2
(3)
P 		32.7
(-3)
P 		41.5
(-2.4)
P 		51
(-1.8)
P 		90
B 90.7
(3)
P 		43.3
(-3)
P 		46.9
(-2.5)
P 		74.5
(0.9)
P 		47
C 115.7
(3)
P 		61.8
(-2.6)
P 		70.3
(-1.7)
P 		57.6
(-3)
P 		58
avr 109.5
(3) 		45.9
(-3) 		52.9
(-2.3) 		61
(-1.6) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 114
1 2 3 4 5 6 range
A 63.4
(-3)
P 		122.7
(3)
P 		89.8
(-0.3)
P 		77.2
(-1.6)
P 		99.9
(0.7)
P 		84.1
(-0.9)
P 		59
B 163
(2.1)
P 		167.3
(2.4)
P 		77.8
(-3)
P 		89
(-2.3)
P 		148.1
(1.2)
P 		177.1
(3)
P 		99
C 121.1
(0.6)
P 		129.3
(1.1)
P 		68.7
(-2.9)
P 		66.6
(-3)
P 		111
(-0.1)
P 		157.8
(3)
P 		91
avr 115.8
(0.7) 		139.8
(3) 		78.8
(-2.9) 		77.6
(-3) 		119.7
(1.1) 		139.7
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191610_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10414
Sequence Type Exemplar sequence
Representative Public ID C49A9.8 NCBI
Target Description C49A9.8 /REP_DB=WormBase Gene ID /WP=CE16938 /TR=O44149 /GB=AAK29790.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=UDP-glucuronosyltransferase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068530
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000001931 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6205869:6209437:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_001027912 7/11 Cross Hyb Matching Probes None
NM_068530 4/11 Cross Hyb Matching Probes None
SNAP00000001920 7/11 Cross Hyb Matching Probes None
C49A9.10 7/11 Cross Hyb Matching Probes None
C49A9.8 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6205874-6209443(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO61431 Hypothetical protein C49A9.8 [Caenorhabditis elegans] ref|NP_500931.2| C49A9.8 [Caenorhabditis elegans] 0.0
blast CAE74033 Hypothetical protein CBG21683 [Caenorhabditis briggsae] 1.0E-178
blast CAB62783 Hypothetical protein C08F11.8 [Caenorhabditis elegans] ref|NP_502633.1| C08F11.8 [Caenorhabditis elegans] 1.0E-173
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 5.4E-35
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001931 1 491-513
Sequence
Target Sequence 
>C. ELEGANS:191610_S_AT
gtgaaacatgtcgagtttgcagcaagatttggaaaacttccgatgttggataattatgga
aggcaccagaatattgtagaatattattttattgatattctcactattattttgtctgtt
ctaatctcagttttctatatttttgtgagacttttaagatttatgttatcaagaaatcgt
agtacaaaggataagagagtcacgtctcgatcgatgagaatactagtcaaaaatggattg
tcaattatcaggatgtgtacgaaacgatatttagcaacttttaacatgagacctccaatg
gaaccagaacccggattgtgctgtcaagaaggatgtgaaagttgtgtatggcttatttat
gcccaagaacttttagattattatcgctcaaaataccctacaaatacactcgaacgagta
aaagaagaaatcggcgacaaaatcgaatcgccatcagtcaaagaatacgttttaatggag
atttcgatgtcagaaaaacgatataaggatatggcggcacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAACATGTCGAGTTTGCAGCAA 146 483 1444 Antisense
GGAAGGCACCAGAATATTGTAGAAT 180 531 1501 Antisense
TCTCACTATTATTTTGTCTGTTCTA 599 613 1542 Antisense
GTCTGTTCTAATCTCAGTTTTCTAT 680 471 1557 Antisense
GCAACTTTTAACATGAGACCTCCAA 641 317 1717 Antisense
GACCTCCAATGGAACCAGAACCCGG 500 383 1733 Antisense
GAACCAGAACCCGGATTGTGCTGTC 553 345 1744 Antisense
GTATGGCTTATTTATGCCCAAGAAC 40 455 1789 Antisense
AATACCCTACAAATACACTCGAACG 342 173 1835 Antisense
AAATCGAATCGCCATCAGTCAAAGA 549 117 1883 Antisense
GATATAAGGATATGGCGGCACTTGG 555 425 1943 Antisense
Sequence Source Affymetrix Proprietary Database