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[191606_at]

Description C01F6.6 /REP_DB=WormBase Gene ID /WP=CE26969 /GB=CAC35814.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 23      4grp_highest_8_8 > 32      4grp_high_8_8 > 50      6grp_highest_nonorm > 41      6grp_total > 12      4grp_total > 61      6grp_highest_sub > 02      6grp_cgc > 62      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 826
1 2 3 4 range
A 1031.3
(2.7)
P 		1050.3
(3)
P 		999.4
(2.2)
P 		682.5
(-3)
P 		368
B 1268.3
(3)
P 		1002.1
(1)
P 		945.5
(0.6)
P 		450.2
(-3)
P 		818
C 1276.4
(3)
P 		1174
(2.1)
P 		1095.3
(1.4)
P 		582.8
(-3)
P 		694
avr 1192
(3) 		1075.5
(1.9) 		1013.4
(1.3) 		571.8
(-3) 		620

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 922
1 2 3 4 5 6 range
A 669.3
(-1.6)
P 		1381.1
(3)
P 		768.9
(-1)
P 		658.5
(-1.7)
P 		459.4
(-3)
P 		462.9
(-3)
P 		922
B 795.2
(2.1)
P 		854.6
(3)
P 		551.2
(-1.8)
P 		619.1
(-0.7)
P 		513.1
(-2.4)
P 		475.2
(-3)
P 		379
C 882.8
(2.2)
P 		747.9
(0)
P 		930.4
(3)
P 		734.9
(-0.2)
P 		612.3
(-2.2)
P 		564.4
(-3)
P 		366
avr 782.4
(0.4) 		994.5
(3) 		750.2
(0) 		670.8
(-0.9) 		528.3
(-2.7) 		500.8
(-3) 		494
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 327
1 2 3 4 range
A 375.5
(3)
P 		228
(-0.2)
P 		261.3
(0.5)
P 		99.9
(-3)
P 		276
B 404.4
(3)
P 		247.5
(-0.1)
P 		219.1
(-0.6)
P 		95.9
(-3)
P 		309
C 422.5
(3)
P 		337.5
(1.4)
P 		381.7
(2.2)
P 		98.3
(-3)
P 		324
avr 400.8
(3) 		271
(0.4) 		287.4
(0.8) 		98
(-3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 379
1 2 3 4 5 6 range
A 123.4
(-2.8)
P 		491.2
(3)
P 		167.5
(-2.1)
P 		167
(-2.1)
P 		138.6
(-2.6)
P 		112.7
(-3)
P 		379
B 276.7
(2.7)
P 		284.5
(3)
P 		133.9
(-3)
P 		164
(-1.8)
P 		208.5
(-0)
P 		177.2
(-1.3)
P 		151
C 327.2
(3)
P 		228.2
(-0.3)
P 		236.8
(-0)
P 		147.8
(-3)
P 		198.1
(-1.3)
P 		189
(-1.6)
P 		179
avr 242.4
(-0.2) 		334.6
(3) 		179.4
(-2.3) 		159.6
(-3) 		181.7
(-2.2) 		159.6
(-3) 		175
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191606_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8530
Sequence Type Exemplar sequence
Representative Public ID C01F6.6 NCBI
Target Description C01F6.6 /REP_DB=WormBase Gene ID /WP=CE26969 /GB=CAC35814.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=PDZ domain (Also known as DHR or GLGF).
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171410(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171410 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-60) (tag-60) mRNA, complete cds. 9/11 A 
SNAP00000031442 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9119081:9121170:1 9/11 None
GENEFINDER00000031452 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9119081:9120984:1 9/11 None
C01F6.6a ENSEMBL cdna:known chromosome:CEL140:IV:9119079:9130362:1 gene:C01F6.6 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177736 2 1 NM_171410 175185_at (11), 191606_at (9)
NM_171411 187623_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9119086-9120056(+) 100.0 100.0
Public Domain and Genome References
Ensembl C01F6.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 0.0
blast CAD37352 Hypothetical protein C01F6.6b [Caenorhabditis elegans] emb|CAD36491.1| Hypothetical protein C01F6.6b [Caenorhabditis elegans] ref|NP_741479.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 1.0E-157
blast CAE74117 Hypothetical protein CBG21779 [Caenorhabditis briggsae] 1.0E-102
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 9.0E-67
blast CAA92439 Hypothetical protein C01F6.6a [Caenorhabditis elegans] emb|CAD36490.1| Hypothetical protein C01F6.6a [Caenorhabditis elegans] ref|NP_741478.1| Temporarily Assigned Gene name family member (tag-60) [Caenorhabditis elegans] 5.0E-63
blast CAE74117 Hypothetical protein CBG21779 [Caenorhabditis briggsae] 1.0E-58
blast CAE74117 Hypothetical protein CBG21779 [Caenorhabditis briggsae] 2.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-5
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.3E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.1E-4
Sequence
Target Sequence 
>C. ELEGANS:191606_AT
gactcctccaagactttgtgtcgttgagaagttgaatggagagaatgaatatggctacaa
cttgcacgccgagaagggacgtggacagttcgttggtaccgtcgatccggatagtcctgc
tgagagaggaggattaatcactggtgaccgaatctttgctgtcaatggtcactcgattat
tggagaaaatcacaagaaggtggttgagcgcataaaagcaaatccaaatcgatgtgaaat
gcttgtgatctctgaagaaggagctaagtggtacaatgaaaataatgttcaaatcacatt
ggaccttccaaatatcgaacgagtttctccaatggttagtcaaaatgtagattttatctt
tacaaaattaaaaaaaacaattttgtgtgacttttctcattctcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCTCCAAGACTTTGTGTCGTT 447 373 36 Antisense
TATGGCTACAACTTGCACGCCGAGA 540 655 85 Antisense
CGCCGAGAAGGGACGTGGACAGTTC 528 255 102 Antisense
TGGACAGTTCGTTGGTACCGTCGAT 582 547 117 Antisense
TACCGTCGATCCGGATAGTCCTGCT 115 651 132 Antisense
TCACTGGTGACCGAATCTTTGCTGT 251 627 173 Antisense
TTTGCTGTCAATGGTCACTCGATTA 288 669 190 Antisense
ATGTGAAATGCTTGTGATCTCTGAA 561 49 267 Antisense
GTTCAAATCACATTGGACCTTCCAA 207 445 322 Antisense
GAACGAGTTTCTCCAATGGTTAGTC 509 347 352 Antisense
TTTTGTGTGACTTTTCTCATTCTCC 178 679 416 Antisense
Sequence Source Affymetrix Proprietary Database