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[191605_at] glutathione S-transferase

Description F13A7.10 /REP_DB=WormBase Gene ID /WP=CE15815 /TR=O45352 /GB=CAB07572.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster 6grp_total > 29      4grp_total > 03      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 25.4
(3)
A 		9.6
(-1.3)
A 		3.6
(-3)
A 		10.4
(-1.1)
A 		22
B 6.6
(-2.9)
A 		6.2
(-2.9)
A 		5.5
(-3)
A 		57.3
(3)
A 		52
C 4.8
(-2.8)
A 		3.6
(-3)
A 		18.4
(-1.1)
A 		51.3
(3)
A 		48
avr 12.3
(-2) 		6.5
(-3) 		9.2
(-2.5) 		39.7
(3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 59.1
(3)
A 		8.8
(-2.4)
A 		7
(-2.6)
A 		3.1
(-3)
A 		23.3
(-0.8)
A 		6.2
(-2.7)
A 		56
B 72.1
(3)
A 		9.3
(-3)
A 		26.8
(-1.3)
A 		20.6
(-1.9)
A 		10.7
(-2.9)
A 		63.8
(2.2)
A 		63
C 69.7
(3)
A 		18.9
(-1.8)
A 		11.9
(-2.4)
A 		5.7
(-3)
A 		58.2
(1.9)
A 		13.2
(-2.3)
A 		64
avr 67
(3) 		12.3
(-2.7) 		15.2
(-2.4) 		9.8
(-3) 		30.7
(-0.8) 		27.7
(-1.1) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 9.3
(3)
A 		2.1
(-2.2)
A 		1
(-3)
A 		1.5
(-2.6)
A 		8
B 2.1
(-2.6)
A 		1.5
(-2.9)
A 		1.3
(-3)
A 		12.2
(3)
A 		11
C 1.6
(-2.5)
A 		1
(-3)
A 		6.4
(1.2)
A 		8.7
(3)
A 		8
avr 4.3
(-0.2) 		1.5
(-3) 		2.9
(-1.6) 		7.5
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 10.9
(3)
A 		3.1
(-1.6)
A 		1.5
(-2.6)
A 		0.8
(-3)
A 		7
(0.7)
A 		1.5
(-2.6)
A 		10
B 25.1
(3)
A 		3.1
(-3)
A 		6.5
(-2.1)
A 		5.5
(-2.3)
A 		4.3
(-2.7)
A 		23.8
(2.6)
A 		22
C 25.8
(3)
A 		5.8
(-1.9)
A 		3
(-2.5)
A 		1.1
(-3)
A 		18.8
(1.3)
A 		4.4
(-2.2)
A 		25
avr 20.6
(3) 		4
(-2.5) 		3.7
(-2.6) 		2.5
(-3) 		10
(-0.5) 		9.9
(-0.5) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14451
Sequence Type Exemplar sequence
Representative Public ID F13A7.10 NCBI
Target Description F13A7.10 /REP_DB=WormBase Gene ID /WP=CE15815 /TR=O45352 /GB=CAB07572.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation /DEF=Glutathione S-transferases.
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074741(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074741 NCBI Caenorhabditis elegans Glutathione S-Transferase family member (gst-44) (gst-44) mRNA, complete cds. 11/11 None
SNAP00000025227 ENSEMBL cdna:SNAP chromosome:CEL140:V:16393598:16394942:1 11/11 None
GENEFINDER00000025236 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16394218:16394942:1 11/11 None
F13A7.10 ENSEMBL cdna:known chromosome:CEL140:V:16393598:16394942:1 gene:F13A7.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16393597-16394942(+) 100.0 100.0
Public Domain and Genome References
Gene Title glutathione S-transferase
Gene Symbol gst-44
Ensembl F13A7.10
Entrez Gene 184405 Entrez gene
SwissProt O45352 EMBL-EBI
WormBase CE15815 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1594048_S_AT similar to glutathione-S-transferase omega 1 cfa
CANINE:1594047_AT similar to glutathione-S-transferase omega 1 cfa
CANINE:1593109_AT similar to glutathione-S-transferase omega 1 cfa
CANINE_2:CFAAFFX.16567.1.S1_S_AT similar to glutathione-S-transferase omega 1 cfa
DROSOPHILA_2:1637801_AT dm
DROSGENOME1:148411_AT dm
CHICKEN:GGA.10968.1.S1_AT glutathione S-transferase omega 1 gga
CHICKEN:GGA.10968.1.S1_S_AT glutathione S-transferase omega 1 gga
CHICKEN:GGA.5507.1.S1_AT glutathione S-transferase omega 1 gga
HG-FOCUS:201470_AT glutathione S-transferase omega 1 hs
HG-U133A:201470_AT glutathione S-transferase omega 1 hs
HG-U133_PLUS_2:201470_AT glutathione S-transferase omega 1 hs
HG-U133A_2:201470_AT glutathione S-transferase omega 1 hs
HG-U95AV2:824_AT glutathione S-transferase omega 1 hs
HC-G110:824_AT glutathione S-transferase omega 1 hs
HUGENEFL:U90313_AT glutathione S-transferase omega 1 hs
U133_X3P:G4758483_3P_AT glutathione S-transferase omega 1 hs
U133_X3P:1557915_3P_S_AT glutathione S-transferase omega 1 hs
HG-U133_PLUS_2:1557915_S_AT glutathione S-transferase omega 1 hs
HG-U95E:68152_AT Glutathione S-transferase omega 1 hs
MOE430A:1416531_AT glutathione S-transferase omega 1 mm
MOUSE430A_2:1416531_AT glutathione S-transferase omega 1 mm
MOUSE430_2:1416531_AT glutathione S-transferase omega 1 mm
MU11KSUBA:U80819_S_AT glutathione S-transferase omega 1 mm
MG-U74AV2:97819_AT glutathione S-transferase omega 1 mm
MOE430A:1456036_X_AT glutathione S-transferase omega 1 mm
MOUSE430A_2:1456036_X_AT glutathione S-transferase omega 1 mm
MOUSE430_2:1456036_X_AT glutathione S-transferase omega 1 mm
RG-U34A:AB008807_AT glutathione S-transferase omega 1 rn
RG-U34A:AB008807_G_AT glutathione S-transferase omega 1 rn
RG-U34C:RC_AI235360_S_AT glutathione S-transferase omega 1 rn
RAE230A:1389832_AT glutathione S-transferase omega 1 rn
RAT230_2:1389832_AT glutathione S-transferase omega 1 rn
RG-U34C:RC_AI234676_S_AT Glutathione S-transferase omega 1 rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4364 glutathione transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07572 Hypothetical protein F13A7.10 [Caenorhabditis elegans] ref|NP_507142.1| Glutathione S-Transferase family member (gst-44) [Caenorhabditis elegans] 1.0E-152
blast CAB07572 Hypothetical protein F13A7.10 [Caenorhabditis elegans] ref|NP_507142.1| Glutathione S-Transferase family member (gst-44) [Caenorhabditis elegans] 1.0E-143
blast CAB07572 Hypothetical protein F13A7.10 [Caenorhabditis elegans] ref|NP_507142.1| Glutathione S-Transferase family member (gst-44) [Caenorhabditis elegans] 1.0E-127
blast CAE71235 Hypothetical protein CBG18105 [Caenorhabditis briggsae] 2.0E-90
blast AAO12454 Hypothetical protein C02D5.3 [Caenorhabditis elegans] ref|NP_871705.2| C02D5.3 [Caenorhabditis elegans] sp|P34277|YKJ3_CAEEL Hypothetical protein C02D5.3 in chromosome III 6.0E-89
blast CAE71235 Hypothetical protein CBG18105 [Caenorhabditis briggsae] 9.0E-88
blast AAO12454 Hypothetical protein C02D5.3 [Caenorhabditis elegans] ref|NP_871705.2| C02D5.3 [Caenorhabditis elegans] sp|P34277|YKJ3_CAEEL Hypothetical protein C02D5.3 in chromosome III 9.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-8
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.3E-11
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-8
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.3E-11
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.1E-8
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 2.2E-9
Sequence
Target Sequence 
>C. ELEGANS:191605_AT
aattctacccagtgatccgtatgaaaaagttcagcagaagttgctgttggaaaggctcag
tgatcagctgactccggcgtttggaagagtttttagagctattaaaaacccggaagagtt
gaaagagaagtttgaaagtatcctgaaagcgtttgaagaagcagaaagtctactggaagg
agctttttattcaggaacatcttcacctggcttcgtcgactacctgatctaccctagctt
tcaacgtgtctattggctaacattccttcttgagatcttcccacttccatcggacaactt
tccaggaccgggctatccaaaattatctcaatggttcaaggcaattacggcaatcccaga
agttgcggctgcaagtcaatcaacggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTACCCAGTGATCCGTATGAA 19 177 363 Antisense
AAGGCTCAGTGATCAGCTGACTCCG 423 161 414 Antisense
AGCTGACTCCGGCGTTTGGAAGAGT 552 77 428 Antisense
TCAGGAACATCTTCACCTGGCTTCG 487 621 553 Antisense
CTACCCTAGCTTTCAACGTGTCTAT 546 225 591 Antisense
GGCTAACATTCCTTCTTGAGATCTT 283 539 617 Antisense
CACTTCCATCGGACAACTTTCCAGG 280 195 644 Antisense
TTTCCAGGACCGGGCTATCCAAAAT 46 669 661 Antisense
GGTTCAAGGCAATTACGGCAATCCC 74 505 695 Antisense
GGCAATCCCAGAAGTTGCGGCTGCA 698 533 711 Antisense
TGCGGCTGCAAGTCAATCAACGGAA 103 583 726 Antisense
Sequence Source Affymetrix Proprietary Database