[Home] | [Total List]

[191604_at] 7TM chemoreceptor, str family

Description W03D2.10 /REP_DB=WormBase Gene ID /WP=CE18320 /GEN=str-122 /TR=O45217 /GB=AAC48262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 02      4grp_total > 18      6grp_cgc > 43      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 2.7
(-2.8)
A 		20.2
(-0.1)
A 		1.7
(-3)
A 		40.1
(3)
A 		38
B 8.1
(-3)
A 		11.5
(3)
A 		9.3
(-0.9)
A 		10.8
(1.8)
A 		3
C 8.6
(-2.5)
A 		9.6
(-2.4)
A 		3.8
(-3)
A 		58.1
(3)
A 		54
avr 6.5
(-2.7) 		13.8
(-1.3) 		4.9
(-3) 		36.3
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 43.3
(1.3)
A 		59.7
(3)
A 		2.8
(-3)
A 		31.4
(0)
A 		4.1
(-2.9)
A 		13.8
(-1.8)
A 		57
B 9.6
(3)
A 		2.9
(-1.8)
A 		3
(-1.8)
A 		1.3
(-3)
A 		3.3
(-1.6)
A 		7.6
(1.6)
A 		8
C 5.4
(-2.3)
A 		29.2
(3)
A 		16.7
(0.2)
A 		2.5
(-3)
A 		2.8
(-2.9)
A 		5.4
(-2.3)
A 		27
avr 19.4
(0.5) 		30.6
(3) 		7.5
(-2.1) 		11.7
(-1.2) 		3.4
(-3) 		8.9
(-1.8) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1
(-2.3)
A 		4.4
(1.4)
A 		0.4
(-3)
A 		5.9
(3)
A 		6
B 2.6
(0.4)
A 		2.9
(3)
A 		2.2
(-3)
A 		2.3
(-2.1)
A 		1
C 2.9
(-1.9)
A 		2.8
(-1.9)
A 		1.3
(-3)
A 		9.8
(3)
A 		9
avr 2.2
(-1.9) 		3.4
(-0.3) 		1.3
(-3) 		6
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 8
(-0.8)
A 		21.2
(3)
A 		0.6
(-3)
A 		8
(-0.8)
A 		1.2
(-2.8)
A 		3.4
(-2.2)
A 		21
B 3.3
(3)
A 		1
(-1.6)
A 		0.7
(-2.2)
A 		0.3
(-3)
A 		1.3
(-1)
A 		2.8
(2)
A 		3
C 2
(-1.9)
A 		8.9
(3)
A 		4.3
(-0.3)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		1.8
(-2.1)
A 		8
avr 4.4
(-0.9) 		10.4
(3) 		1.9
(-2.5) 		2.9
(-1.8) 		1.1
(-3) 		2.7
(-2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191604_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11074
Sequence Type Exemplar sequence
Representative Public ID W03D2.10 NCBI
Target Description W03D2.10 /REP_DB=WormBase Gene ID /WP=CE18320 /GEN=str-122 /TR=O45217 /GB=AAC48262.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068071(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068071 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-122) (str-122) mRNA, complete cds. 11/11 None
GENEFINDER00000027047 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4065898:4069541:1 10/11 None
W03D2.10 ENSEMBL cdna:known chromosome:CEL140:IV:4065898:4068405:1 gene:W03D2.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027042 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4065903-4068411(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-122
Ensembl W03D2.10
Entrez Gene 192003 Entrez gene
SwissProt O45217 EMBL-EBI
WormBase CE18320 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC48262 Seven tm receptor protein 122 [Caenorhabditis elegans] ref|NP_500472.1| Seven TM Receptor family member (str-122) [Caenorhabditis elegans] 0.0
blast AAC48262 Seven tm receptor protein 122 [Caenorhabditis elegans] ref|NP_500472.1| Seven TM Receptor family member (str-122) [Caenorhabditis elegans] 1.0E-174
blast AAC48256 Hypothetical protein W03D2.2 [Caenorhabditis elegans] ref|NP_500473.1| W03D2.2 [Caenorhabditis elegans] 1.0E-139
blast CAE66760 Hypothetical protein CBG12114 [Caenorhabditis briggsae] 1.0E-69
blast CAE66760 Hypothetical protein CBG12114 [Caenorhabditis briggsae] 3.0E-69
blast AAG24137 Seven tm receptor protein 129 [Caenorhabditis elegans] ref|NP_505088.1| Seven TM Receptor family member (str-129) [Caenorhabditis elegans] 3.0E-54
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.9E-81
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 2.0E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500472.1 6 7-29,90-112,133-152,200-222,254-276,286-308
W03D2.10 6 7-29,90-112,133-152,200-222,254-276,286-308
GENEFINDER00000027047 6 7-29,90-112,133-152,200-222,254-276,291-313
Sequence
Target Sequence 
>C. ELEGANS:191604_AT
tattatcactattctctggtacctagtacacggctatttttgtggtccaaccgagtttaa
gaccgagcttgttaggcaagaaatatgggataattatcaggtggattttgggagcgtcgg
ctactttgggttcttgtatttttacaccgacaatacaggcgtctccagagctaactggat
agattttcttggcaccgcaacaaactgcacggttatgacaatttgcacgatggttatgac
aataagcgggttgaaaacctacaagaagattaatgataataagagaactattagtaaacg
gacgaaagagctgaataagcagttgtttaggactctggttatacagaccataatcccaat
attcacattgttcttccctgtcggagcgatcatagtgctcccaattttctctattccaat
tccaacttctgtatcaaatgtggtaacaatgactaatggtatctatccgggacttgatgc
attagttgtaatatttatgattcaggtgtatagggatgcagtgttttgtaaaacaaggaa
actagtcggatcgctgagtgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATCACTATTCTCTGGTACCTA 256 663 426 Antisense
GGTACCTAGTACACGGCTATTTTTG 409 499 443 Antisense
GGCTATTTTTGTGGTCCAACCGAGT 15 495 457 Antisense
GATTTTGGGAGCGTCGGCTACTTTG 162 429 529 Antisense
ATACAGGCGTCTCCAGAGCTAACTG 14 25 578 Antisense
GATTTTCTTGGCACCGCAACAAACT 235 425 607 Antisense
CAATATTCACATTGTTCTTCCCTGT 439 181 782 Antisense
AGCGATCATAGTGCTCCCAATTTTC 595 81 810 Antisense
ATTTTCTCTATTCCAATTCCAACTT 64 15 829 Antisense
ACTAATGGTATCTATCCGGGACTTG 419 99 877 Antisense
GAAACTAGTCGGATCGCTGAGTGTG 624 355 963 Antisense
Sequence Source Affymetrix Proprietary Database