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[191603_at] 7TM chemoreceptor, str family

Description C50H11.9 /REP_DB=WormBase Gene ID /WP=CE25822 /GEN=str-244 /TR=Q9GUE4 /GB=AAG24006.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 08      4grp_total > 29      6grp_cgc > 11      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 37.3
(0.4)
A 		61.4
(3)
A 		5.7
(-3)
A 		52.8
(2.1)
A 		56
B 58.5
(3)
P 		33.9
(-1.3)
A 		30.5
(-1.9)
A 		24.2
(-3)
A 		34
C 46.7
(0.5)
A 		41.6
(-0.4)
A 		27.6
(-3)
A 		60.4
(3)
P 		33
avr 47.5
(3) 		45.6
(2.6) 		21.3
(-3) 		45.8
(2.6) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 73.4
(3)
P 		20.5
(-2.7)
A 		29.4
(-1.7)
P 		39.2
(-0.7)
A 		22.4
(-2.5)
A 		17.5
(-3)
A 		56
B 36.6
(1.4)
M 		44.9
(3)
A 		25.5
(-0.8)
A 		15.3
(-2.8)
A 		14.2
(-3)
A 		21.3
(-1.6)
A 		31
C 28.3
(1.2)
A 		18.9
(-3)
A 		23.2
(-1.1)
A 		29.3
(1.6)
A 		32.4
(3)
A 		25.3
(-0.2)
A 		14
avr 46.1
(3) 		28.1
(-1.4) 		26
(-1.9) 		27.9
(-1.4) 		23
(-2.6) 		21.4
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 13.6
(3)
A 		13.3
(2.9)
A 		1.5
(-3)
A 		7.7
(0.1)
A 		12
B 18.6
(3)
P 		8.4
(-1.6)
A 		7.1
(-2.1)
A 		5.2
(-3)
A 		13
C 15.5
(3)
A 		12
(-0.6)
A 		9.6
(-3)
A 		10.2
(-2.4)
P 		6
avr 15.9
(3) 		11.2
(0.1) 		6.1
(-3) 		7.7
(-2) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 13.5
(3)
P 		7.3
(-1)
A 		6.4
(-1.6)
P 		9.9
(0.7)
A 		6.8
(-1.4)
A 		4.3
(-3)
A 		9
B 12.7
(1.8)
M 		14.9
(3)
A 		6.2
(-1.8)
A 		4.1
(-3)
A 		5.8
(-2.1)
A 		7.9
(-0.9)
A 		11
C 10.5
(3)
A 		5.8
(-3)
A 		5.9
(-2.9)
A 		5.9
(-2.9)
A 		10.5
(3)
A 		8.5
(0.4)
A 		5
avr 12.2
(3) 		9.3
(0.1) 		6.2
(-3) 		6.6
(-2.6) 		7.7
(-1.5) 		6.9
(-2.3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15676
Sequence Type Exemplar sequence
Representative Public ID C50H11.9 NCBI
Target Description C50H11.9 /REP_DB=WormBase Gene ID /WP=CE25822 /GEN=str-244 /TR=Q9GUE4 /GB=AAG24006.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071432(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071432 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-244) (str-244) mRNA, complete cds. 11/11 None
SNAP00000043558 ENSEMBL cdna:SNAP chromosome:CEL140:V:3057526:3058923:-1 10/11 None
GENEFINDER00000043573 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3057098:3062005:-1 11/11 None
C50H11.9 ENSEMBL cdna:known chromosome:CEL140:V:3057526:3058923:-1 gene:C50H11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3057525-3058923(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-244
Ensembl C50H11.9
Entrez Gene 192044 Entrez gene
SwissProt Q9GUE4 EMBL-EBI
WormBase CE25822 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503834 Serpentine Receptor, class T family member (srt-15) [Caenorhabditis elegans] gb|AAG23997.2| Serpentine receptor, class t protein 15 [Caenorhabditis elegans] 0.0
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 1.0E-172
blast H88985 protein C50H11.9 [imported] - Caenorhabditis elegans 1.0E-160
blast NP_503833 Seven TM Receptor family member (str-244) [Caenorhabditis elegans] gb|AAG24006.1| Seven tm receptor protein 244 [Caenorhabditis elegans] 1.0E-140
blast H88985 protein C50H11.9 [imported] - Caenorhabditis elegans 1.0E-129
blast AAC17786 Seven tm receptor protein 243 [Caenorhabditis elegans] ref|NP_503437.1| Seven TM Receptor family member (str-243) [Caenorhabditis elegans] 1.0E-126
blast H88985 protein C50H11.9 [imported] - Caenorhabditis elegans 1.0E-82
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 1.5E-10
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 2.1E-5
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.7E-124
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503833.1 7 13-30,43-62,94-116,129-151,202-224,245-267,282-304
C50H11.9 7 13-30,43-62,94-116,129-151,202-224,245-267,282-304
SNAP00000043558 4 13-30,85-107,128-150,165-187
GENEFINDER00000043573 11 52-74,87-109,124-146,167-189,214-236,257-279,366-388,401-423,474-496,517-539,554-576
Sequence
Target Sequence 
>C. ELEGANS:191603_AT
ttaattttctttcggccatctcaagaaacggatgcaattttgaaagaaacctatttatta
gaacgtaactcgaccctgtctgaaattacctactttggttttaactactggattcaaaat
gatcaagggagagaagttttgaacctgaaagcatcagtcggaatgattcttatcatgacc
ttggtaaccagttcaatctccactatattgatttttggaacattgtgctaccggaaactg
ggaactcttgttcaagtgtcgagaaactctactcaatatcgtcaactacagttacaactt
ttaaactctctggtcggacaggcacttgtaccagctttcttaatgcttgccccagcttcc
attgttttcagtattccgttttttcacgcaggaaatgaattaatgggtgcactactggga
atcacgatttcaatgtatccagtgttggacccacttcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAATTTTCTTTCGGCCATCTCAAG 477 685 454 Antisense
ATTAGAACGTAACTCGACCCTGTCT 516 11 510 Antisense
GACCCTGTCTGAAATTACCTACTTT 283 381 525 Antisense
GATTCTTATCATGACCTTGGTAACC 611 431 618 Antisense
GGAACATTGTGCTACCGGAAACTGG 500 529 670 Antisense
GAAACTCTACTCAATATCGTCAACT 555 357 716 Antisense
AAACTCTCTGGTCGGACAGGCACTT 526 127 756 Antisense
GTACCAGCTTTCTTAATGCTTGCCC 286 457 781 Antisense
CCCAGCTTCCATTGTTTTCAGTATT 364 259 804 Antisense
TCAGTATTCCGTTTTTTCACGCAGG 355 623 821 Antisense
TGTATCCAGTGTTGGACCCACTTCC 88 561 887 Antisense
Sequence Source Affymetrix Proprietary Database