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[191602_s_at] Myosin head (motor domain)

Description Y11D7A.14 /REP_DB=WormBase Gene ID /WP=CE20196 /TR=Q9XWR0 /GB=CAA21588.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Myosin head (motor domain)
Cluster 6grp_total > 21      4grp_total > 44      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 105.5
(3)
P 		80.6
(-0.9)
P 		66.8
(-3)
P 		81.4
(-0.7)
A 		39
B 112.6
(1.3)
P 		147.2
(3)
P 		55.8
(-1.6)
P 		28.1
(-3)
A 		119
C 94.2
(1.5)
P 		120.9
(3)
P 		63.4
(-0.3)
P 		16
(-3)
A 		105
avr 104.1
(2) 		116.2
(3) 		62
(-1.4) 		41.8
(-3) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 69.6
(-1.2)
A 		173.6
(2.9)
P 		175.3
(3)
P 		46.3
(-2.1)
P 		33.9
(-2.6)
A 		23.9
(-3)
A 		151
B 89.4
(0.7)
P 		89.6
(0.7)
P 		128.4
(3)
P 		71.3
(-0.4)
P 		31.6
(-2.7)
A 		26.6
(-3)
A 		102
C 66
(-0.3)
P 		128.4
(3)
P 		89.8
(0.9)
P 		87.3
(0.8)
A 		36.2
(-1.9)
A 		15.5
(-3)
A 		113
avr 75
(-0.1) 		130.5
(3) 		131.2
(3) 		68.3
(-0.5) 		33.9
(-2.3) 		22
(-3) 		109
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38.4
(3)
P 		17.5
(-1.7)
P 		17.5
(-1.7)
P 		11.9
(-3)
A 		27
B 35.9
(2.9)
P 		36.4
(3)
P 		12.9
(-1.6)
P 		6
(-3)
A 		30
C 31.2
(2.3)
P 		34.8
(3)
P 		22.1
(0.6)
P 		2.7
(-3)
A 		32
avr 35.2
(3) 		29.6
(1.8) 		17.5
(-0.8) 		6.9
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 12.8
(-2.2)
A 		61.7
(3)
P 		38.2
(0.5)
P 		11.7
(-2.4)
P 		10.2
(-2.5)
A 		5.8
(-3)
A 		56
B 31.1
(3)
P 		29.8
(2.6)
P 		31.2
(3)
P 		18.9
(-0.5)
P 		12.8
(-2.2)
A 		9.9
(-3)
A 		21
C 24.5
(0.4)
P 		39.2
(3)
P 		22.8
(0.1)
P 		17.6
(-0.8)
A 		11.7
(-1.9)
A 		5.2
(-3)
A 		34
avr 22.8
(-0.4) 		43.6
(3) 		30.7
(0.9) 		16.1
(-1.5) 		11.6
(-2.2) 		7
(-3) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191602_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9742
Sequence Type Exemplar sequence
Representative Public ID Y11D7A.14 NCBI
Target Description Y11D7A.14 /REP_DB=WormBase Gene ID /WP=CE20196 /TR=Q9XWR0 /GB=CAA21588.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=Myosin head (motor domain)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069219 NCBI Caenorhabditis elegans Y11D7A.14 (Y11D7A.14) mRNA, complete cds. 11/11 None
SNAP00000011214 ENSEMBL cdna:SNAP chromosome:CEL140:IV:9277344:9282973:1 11/11 None
GENEFINDER00000011233 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:9275707:9282973:1 11/11 None
Y11D7A.14 ENSEMBL cdna:known chromosome:CEL140:IV:9274524:9283067:1 gene:Y11D7A.14 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9275712-9282979(+) 100.0 100.0
Public Domain and Genome References
Gene Title Myosin head (motor domain)
Ensembl Y11D7A.14
Entrez Gene 177750 Entrez gene
SwissProt Q9XWR0 EMBL-EBI
WormBase CE32957 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16459 myosin inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3774 motor activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA21588 Hypothetical protein Y11D7A.14 [Caenorhabditis elegans] ref|NP_501620.2| Y11D7A.14 [Caenorhabditis elegans] 0.0
blast CAE69037 Hypothetical protein CBG15043 [Caenorhabditis briggsae] 0.0
blast AAA29905 myosin heavy chain 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 1.10000002384186
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 3.09999990463257
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.0E-126
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.3E-103
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 8.5E-41
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:191602_S_AT
gtgaagcgagagttggatgtttataaatcacagttatcagctgttgaatcggaaaaagaa
tcacttcaaacggcaaatcgaaagcaatcaaatcaacttcaagaaacaacacgccagctg
aattcagctcaaaaaaatgcagataatttggcacttcgtctgaaaaaagctctggcggat
tgtgatgaatggaagaaaaagcatgaagaatcaattgttgagagtaaaactgaaatatta
atggaaagaaaacgagcaatggatagagcagaagcatgtgaaaaagaaactgaactaaaa
cagtcacgtatggcaacaattgaaagtgcacgaatggaattaggtggagaattggcaaga
actcaatcggaattagatagatgtcgacagattattatacagttagaagagaatttgaag
agtcaagagtcattgggaaatagttttggaagacatcaaactaatttgaattttgagatt
gaaaacttgagagatgagaattgtgcgttgaaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGAAGCGAGAGTTGGATGTTTATA 562 481 3637 Antisense
ATCACAGTTATCAGCTGTTGAATCG 492 27 3663 Antisense
AAGAATCACTTCAAACGGCAAATCG 567 151 3692 Antisense
AAACAACACGCCAGCTGAATTCAGC 11 129 3740 Antisense
AGATAATTTGGCACTTCGTCTGAAA 475 63 3777 Antisense
TTCGTCTGAAAAAAGCTCTGGCGGA 13 693 3791 Antisense
AAAGCTCTGGCGGATTGTGATGAAT 222 125 3802 Antisense
AAACAGTCACGTATGGCAACAATTG 190 127 3934 Antisense
TGGCAAGAACTCAATCGGAATTAGA 506 543 3989 Antisense
GATGTCGACAGATTATTATACAGTT 527 409 4016 Antisense
GAGATGAGAATTGTGCGTTGAAAGC 27 395 4127 Antisense
Sequence Source Affymetrix Proprietary Database