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[191601_at] 7TM chemoreceptor, srh family

Description ZK697.11 /REP_DB=WormBase Gene ID /WP=CE18460 /GEN=srh-199 /TR=O44579 /GB=AAC48251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 10      4grp_total > 28      6grp_cgc > 63      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 38.2
(2.4)
A 		41.9
(3)
A 		1.6
(-3)
A 		11.5
(-1.5)
A 		40
B 59.8
(3)
A 		29.2
(-1.1)
A 		15.4
(-3)
A 		41.1
(0.5)
A 		44
C 27.9
(-3)
A 		50.9
(-1.5)
A 		28
(-3)
A 		122.6
(3)
A 		95
avr 42
(0.7) 		40.7
(0.6) 		15
(-3) 		58.4
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 5.1
(-3)
A 		32.2
(0.3)
A 		55.1
(3)
M 		32.3
(0.3)
A 		42.1
(1.4)
A 		18.6
(-1.4)
A 		50
B 36.9
(0.5)
A 		52.7
(3)
A 		23.9
(-1.6)
A 		21
(-2)
A 		33.2
(-0.1)
A 		14.8
(-3)
A 		38
C 12.4
(-2)
A 		62
(3)
A 		22.4
(-1)
A 		45.9
(1.4)
A 		2
(-3)
A 		28.9
(-0.3)
A 		60
avr 18.1
(-3) 		49
(3) 		33.8
(0) 		33.1
(-0.1) 		25.8
(-1.5) 		20.8
(-2.5) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 13.9
(3)
A 		9.1
(0.9)
A 		0.4
(-3)
A 		1.7
(-2.4)
A 		14
B 19.1
(3)
A 		7.2
(-1.6)
A 		3.6
(-3)
A 		8.8
(-1)
A 		16
C 9.2
(-3)
A 		14.6
(-0.2)
A 		9.8
(-2.7)
A 		20.7
(3)
A 		12
avr 14.1
(3) 		10.3
(0.6) 		4.6
(-3) 		10.4
(0.7) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 0.9
(-3)
A 		11.5
(2.4)
A 		12
(2.6)
M 		8.2
(0.7)
A 		12.7
(3)
A 		4.5
(-1.2)
A 		12
B 12.8
(0.7)
A 		17.5
(3)
A 		5.8
(-2.9)
A 		5.6
(-3)
A 		13.5
(1)
A 		5.5
(-3)
A 		12
C 4.6
(-1.7)
A 		18.9
(3)
A 		5.7
(-1.4)
A 		9.2
(-0.2)
A 		0.7
(-3)
A 		9.7
(-0)
A 		18
avr 6.1
(-3) 		16
(3) 		7.8
(-2) 		7.7
(-2) 		9
(-1.2) 		6.6
(-2.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191601_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15678
Sequence Type Exemplar sequence
Representative Public ID ZK697.11 NCBI
Target Description ZK697.11 /REP_DB=WormBase Gene ID /WP=CE18460 /GEN=srh-199 /TR=O44579 /GB=AAC48251.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071096(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071096 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-199) (srh-199) mRNA, complete cds. 11/11 None
ZK697.11 ENSEMBL cdna:known chromosome:CEL140:V:1749830:1751378:-1 gene:ZK697.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036771 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1749829-1751378(-) 97.97 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srh family
Gene Symbol srh-199
Ensembl ZK697.11
Entrez Gene 191415 Entrez gene
SwissProt O44579 EMBL-EBI
WormBase CE18460 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC48251 Serpentine receptor, class h protein 199 [Caenorhabditis elegans] ref|NP_503497.1| Serpentine Receptor, class H family member (srh-199) [Caenorhabditis elegans] 0.0
blast AAG24117 Serpentine receptor, class h protein 193 [Caenorhabditis elegans] ref|NP_504183.2| Serpentine Receptor, class H family member (srh-193) [Caenorhabditis elegans] 3.0E-94
blast AAW88397 Serpentine receptor, class h protein 194, isoform b [Caenorhabditis elegans] ref|NP_001023946.1| Serpentine Receptor, class H family member (srh-194) [Caenorhabditis elegans] 8.0E-93
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503497.1 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
ZK697.11 7 20-42,55-77,97-119,140-162,200-222,243-265,278-300
Sequence
Target Sequence 
>C. ELEGANS:191601_AT
taatagaggtcctgctgatccttcctataaaatgttttgttccagaacagacacatgcac
tacaatacgtgtttcagaaccttccatgtctacctagatatatatacgatggtccggttt
acgtggttgctgaagacatcacttaccatttttcatttattttctcattgcatgtgctta
tttgtttcgaagtgattttctttttcggatatcttattcggagcggtcgtcagcaactga
aaggaaaaacaatgtctcaaagaacgtttcagttgcagaaaaagttttttatagcactca
tttctcaagtttgtgtgccatcagttttctttattattccactaatctacgttgtgataa
caattttaacgaaatattataatcaaggatatcttaatattgcattcacaattatcgcta
tgcatggacttgtttcgacatctgcaatgctttcacttcatcaaccctatcgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATAGAGGTCCTGCTGATCCTTCC 537 635 455 Antisense
GTTCCAGAACAGACACATGCACTAC 440 441 493 Antisense
AATACGTGTTTCAGAACCTTCCATG 170 171 518 Antisense
GAACCTTCCATGTCTACCTAGATAT 567 345 531 Antisense
GTCCGGTTTACGTGGTTGCTGAAGA 109 461 566 Antisense
AAGACATCACTTACCATTTTTCATT 599 153 587 Antisense
ATTGCATGTGCTTATTTGTTTCGAA 587 5 621 Antisense
TATTCGGAGCGGTCGTCAGCAACTG 360 663 669 Antisense
GTTTGTGTGCCATCAGTTTTCTTTA 59 453 763 Antisense
GCATGGACTTGTTTCGACATCTGCA 396 311 876 Antisense
TTCACTTCATCAACCCTATCGGGAA 153 687 906 Antisense
Sequence Source Affymetrix Proprietary Database