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[191600_s_at] sodium/phosphate transporter

Description T01H3.3 /REP_DB=WormBase Gene ID /WP=CE03597 /TR=Q22089 /GB=CAA92687.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster 6grp_highest_10_10 > 59      6grp_high1_10_10 > 93      4grp_highest_8_8 > 26      4grp_high_8_8 > 59      6grp_highest_nonorm > 73      6grp_total > 85      4grp_total > 61      6grp_highest_sub > In      6grp_high1_sub > 04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 609.2
(3)
P 		535.6
(0.5)
P 		499.8
(-0.7)
P 		433.1
(-3)
P 		176
B 374.5
(3)
P 		348.5
(-0)
P 		332.2
(-1.9)
P 		323.2
(-3)
P 		51
C 362
(-1.1)
P 		339
(-1.6)
P 		555.9
(3)
P 		272.1
(-3)
P 		284
avr 448.6
(2.3) 		407.7
(0.3) 		462.6
(3) 		342.8
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 329
1 2 3 4 5 6 range
A 589.6
(-0.1)
P 		481.6
(-2.8)
P 		475.1
(-3)
P 		606.5
(0.3)
P 		713.7
(3)
P 		668.1
(1.9)
P 		239
B 507.9
(-1.2)
P 		439.1
(-3)
P 		510.5
(-1.2)
P 		597.3
(1)
P 		574.9
(0.5)
P 		673.5
(3)
P 		234
C 434.7
(-3)
P 		492.5
(-1.9)
P 		474.7
(-2.3)
P 		763.3
(3)
P 		505.4
(-1.7)
P 		723.5
(2.3)
P 		329
avr 510.7
(-1.9) 		471.1
(-3) 		486.8
(-2.6) 		655.7
(2.1) 		598
(0.5) 		688.4
(3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 176
1 2 3 4 range
A 221.8
(3)
P 		116.3
(-1)
P 		130.7
(-0.5)
P 		63.4
(-3)
P 		158
B 119.4
(3)
P 		86.1
(-1)
P 		77
(-2)
P 		68.9
(-3)
P 		51
C 119.8
(0)
P 		97.5
(-0.9)
P 		193.7
(3)
P 		45.9
(-3)
P 		148
avr 153.7
(3) 		100
(-0.4) 		133.8
(1.7) 		59.4
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 148
1 2 3 4 5 6 range
A 108.7
(-2.7)
P 		171.3
(0.6)
P 		103.5
(-3)
P 		153.8
(-0.3)
P 		215.4
(3)
P 		162.7
(0.2)
P 		112
B 176.7
(-0.5)
P 		146.2
(-2)
P 		124
(-3)
P 		158.2
(-1.4)
P 		233.6
(2.2)
P 		251.2
(3)
P 		127
C 161.1
(-1)
P 		150.3
(-1.5)
P 		120.8
(-3)
P 		153.5
(-1.4)
P 		163.5
(-0.9)
P 		242.2
(3)
P 		121
avr 148.8
(-1.1) 		155.9
(-0.7) 		116.1
(-3) 		155.2
(-0.7) 		204.2
(2.2) 		218.7
(3) 		103
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191600_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5762
Sequence Type Exemplar sequence
Representative Public ID T01H3.3 NCBI
Target Description T01H3.3 /REP_DB=WormBase Gene ID /WP=CE03597 /TR=Q22089 /GB=CAA92687.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation /DEF=sodium-phosphate transporter
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063256(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063256 NCBI Caenorhabditis elegans T01H3.3 (T01H3.3) mRNA, complete cds. 11/11 None
SNAP00000018635 ENSEMBL cdna:SNAP chromosome:CEL140:II:7871157:7873797:-1 11/11 None
GENEFINDER00000018642 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7871157:7873797:-1 11/11 None
T01H3.3.2 ENSEMBL cdna:known chromosome:CEL140:II:7870844:7873816:-1 gene:T01H3.3 11/11 None
T01H3.3.1 ENSEMBL cdna:known chromosome:CEL140:II:7870844:7873814:-1 gene:T01H3.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7871153-7873794(-) 100.0 100.0
Public Domain and Genome References
Gene Title sodium/phosphate transporter
Ensembl T01H3.3
Entrez Gene 174270 Entrez gene
SwissProt Q22089 EMBL-EBI
WormBase CE03597 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92687 Hypothetical protein T01H3.3 [Caenorhabditis elegans] ref|NP_495657.1| T01H3.3 [Caenorhabditis elegans] 0.0
blast CAE59828 Hypothetical protein CBG03300 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495657.1 12 21-43,200-222,229-246,256-278,287-306,321-340,383-405,420-442,455-477,481-503,516-538,548-570
T01H3.3.2 12 21-43,200-222,229-246,256-278,287-306,321-340,383-405,420-442,455-477,481-503,516-538,548-570
T01H3.3.1 12 21-43,200-222,229-246,256-278,287-306,321-340,383-405,420-442,455-477,481-503,516-538,548-570
SNAP00000018635 12 21-43,200-222,229-246,256-278,287-306,321-340,383-405,420-442,455-477,481-503,516-538,548-570
GENEFINDER00000018642 12 21-43,200-222,229-246,256-278,287-306,321-340,383-405,420-442,455-477,481-503,516-538,548-570
Sequence
Target Sequence 
>C. ELEGANS:191600_S_AT
ttcttttcaatttatcttccatctcttctggcgtcacccgatgtttttgttgttgaagga
cttgggattcacagtagtttcccttttcagcttttgccgttatcatgtatcatcttttct
tctctcaacgtcctcttcaaaccttcaacaaagatcgtcagaattttaaatttcacggca
tttgccattggcgcaattttgatgatcgctatagttctcgtcgcttcactacaaaccaaa
gccggacttttttcgcttcttcttatttcaatgctaccatttggcttggccattgtcgct
ggatttgtaagaagtttaaccgtcgttggaagagtttttgccgagcaaattgtggcaatg
tgtgctgttccatttggactggcgttctcgattcttccaatggttgttacatattctgtg
actgaaaacaaactggcagaatggatgaaagtcacaatgttcttatttttcgttctttct
gctgtcgccatcgagtttgcagtttttggaagaggtaaatcagcgtcgtgggctgcttcg
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTTTTCAATTTATCTTCCATCTC 621 689 1213 Antisense
GGATTCACAGTAGTTTCCCTTTTCA 452 509 1277 Antisense
TCAGCTTTTGCCGTTATCATGTATC 602 623 1299 Antisense
TTCACGGCATTTGCCATTGGCGCAA 24 687 1384 Antisense
GATGATCGCTATAGTTCTCGTCGCT 289 411 1413 Antisense
TTTTCGCTTCTTCTTATTTCAATGC 375 677 1462 Antisense
AATGCTACCATTTGGCTTGGCCATT 497 165 1482 Antisense
CATTTGGACTGGCGTTCTCGATTCT 332 213 1583 Antisense
TGTTCTTATTTTTCGTTCTTTCTGC 27 563 1670 Antisense
TCTGCTGTCGCCATCGAGTTTGCAG 234 609 1690 Antisense
AAATCAGCGTCGTGGGCTGCTTCGT 570 117 1729 Antisense
Sequence Source Affymetrix Proprietary Database