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[191599_at] cleavage stimulation factor

Description T25D1.3 /REP_DB=WormBase Gene ID /WP=CE05019 /TR=Q22777 /GB=AAA82464.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cleavage stimulation factor
Cluster 6grp_total > 30      4grp_total > 11      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 29.9
(-1.8)
A 		36.1
(-1.6)
A 		2.6
(-3)
A 		142.4
(3)
P 		140
B 48.5
(-0.9)
A 		65.7
(0.4)
A 		19.5
(-3)
A 		101.6
(3)
P 		82
C 50.5
(-2.4)
P 		46.3
(-2.7)
P 		42.1
(-3)
A 		130.3
(3)
A 		88
avr 43
(-1.7) 		49.4
(-1.4) 		21.4
(-3) 		124.8
(3) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 36.4
(-1.4)
A 		33.7
(-1.9)
A 		60.3
(3)
P 		39
(-0.9)
A 		49.4
(1)
P 		27.5
(-3)
A 		33
B 47.4
(2.4)
A 		38.9
(0.7)
A 		38.2
(0.6)
A 		50.1
(3)
A 		20.7
(-3)
M 		36.3
(0.2)
A 		29
C 16.8
(-3)
A 		76.7
(3)
P 		65.9
(1.9)
M 		64.7
(1.8)
P 		33
(-1.4)
A 		22.3
(-2.4)
A 		60
avr 33.5
(-1.9) 		49.8
(1.9) 		54.8
(3) 		51.3
(2.2) 		34.4
(-1.7) 		28.7
(-3) 		26
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 10.9
(0)
A 		7.8
(-0.9)
A 		0.7
(-3)
A 		20.8
(3)
P 		20
B 15.5
(0.8)
A 		16.2
(1.1)
A 		4.5
(-3)
A 		21.7
(3)
P 		17
C 16.7
(-0.7)
P 		13.3
(-3)
P 		14.7
(-2)
A 		22
(3)
A 		9
avr 14.4
(0.1) 		12.4
(-0.7) 		6.6
(-3) 		21.5
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 6.7
(-3)
A 		12
(0.9)
A 		13.1
(1.7)
P 		9.9
(-0.7)
A 		14.9
(3)
P 		6.7
(-3)
A 		8
B 16.5
(3)
A 		12.9
(0.3)
A 		9.3
(-2.3)
A 		13.3
(0.6)
A 		8.4
(-3)
M 		13.5
(0.8)
A 		8
C 6.2
(-3)
A 		23.4
(3)
P 		16.8
(0.7)
M 		13
(-0.6)
P 		10.7
(-1.4)
A 		7.5
(-2.5)
A 		17
avr 9.8
(-2.5) 		16.1
(3) 		13.1
(0.4) 		12.1
(-0.5) 		11.3
(-1.2) 		9.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191599_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17472
Sequence Type Exemplar sequence
Representative Public ID T25D1.3 NCBI
Target Description T25D1.3 /REP_DB=WormBase Gene ID /WP=CE05019 /TR=Q22777 /GB=AAA82464.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation /DEF=cleavage stimulation factor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078276(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078276 NCBI Caenorhabditis elegans T25D1.3 (T25D1.3) mRNA, complete cds. 11/11 None
T25D1.3 ENSEMBL cdna:known chromosome:CEL140:X:16505161:16507324:1 gene:T25D1.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025928 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16505160-16507324(+) 65.69 100.0
Public Domain and Genome References
Gene Title cleavage stimulation factor
Ensembl T25D1.3
Entrez Gene 188891 Entrez gene
SwissProt Q22777 EMBL-EBI
WormBase CE05019 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82464 Hypothetical protein T25D1.3 [Caenorhabditis elegans] ref|NP_510677.1| T25D1.3 [Caenorhabditis elegans] 1.0E-79
Protein Domains
Database ID Description E-Value
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.7E-4
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 5.0E-9
Pfam IPR008164 EMBL-EBI Repeat of unknown function XGLTT 1.7E-6
Sequence
Target Sequence 
>C. ELEGANS:191599_AT
gaggggatttttcatttattctgcattatttcgacttgtctctgctgattttatcgattt
tttctcgagtgcacaatttatgactgcaccttctgtgcaattgggcaattggatgacagg
aaaacagagactcatttcagaaaccatgaacctggaaaatctaccttcagttgtccatcg
aaaactgttcaaaatgtttgacgcatgtgatttattctttttatcaattacttttggcaa
catcaaagagactattcaaaagatgaacttggacatttccgatattgcaatggacatgac
tgcaaaaaggaaattgttcttgttaaagattcagtgctcctcaaccggcaggcaatattt
gtcattcactaccaaaatcccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGGATTTTTCATTTATTCTGCA 665 399 222 Antisense
ATTCTGCATTATTTCGACTTGTCTC 654 9 239 Antisense
GACTTGTCTCTGCTGATTTTATCGA 464 371 254 Antisense
CACAATTTATGACTGCACCTTCTGT 595 193 293 Antisense
GCACCTTCTGTGCAATTGGGCAATT 80 315 307 Antisense
AAAATCTACCTTCAGTTGTCCATCG 464 131 377 Antisense
GACGCATGTGATTTATTCTTTTTAT 332 381 421 Antisense
GAACTTGGACATTTCCGATATTGCA 687 349 486 Antisense
TTAAAGATTCAGTGCTCCTCAACCG 36 681 544 Antisense
CTCCTCAACCGGCAGGCAATATTTG 660 223 558 Antisense
GTCATTCACTACCAAAATCCCAAAT 254 467 582 Antisense
Sequence Source Affymetrix Proprietary Database