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[191598_at] gamma-glutamyltranspeptidase

Description Y7A9A.1 /REP_DB=WormBase Gene ID /WP=CE28151 /TR=O18256 /GB=CAB16541.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=gamma-glutamyltranspeptidase
Cluster 6grp_total > 06      4grp_total > 55      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 148
(3)
A 		54.6
(-2.3)
A 		91.2
(-0.2)
A 		42.3
(-3)
A 		106
B 157.4
(3)
P 		73.1
(-3)
A 		90.2
(-1.8)
A 		79.7
(-2.5)
A 		84
C 129
(3)
P 		48.4
(-3)
A 		78.9
(-0.7)
A 		61.7
(-2)
A 		81
avr 144.8
(3) 		58.7
(-3) 		86.8
(-1) 		61.2
(-2.8) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 133
1 2 3 4 5 6 range
A 149.9
(3)
A 		74.1
(-0.9)
A 		55.8
(-1.9)
A 		58.4
(-1.7)
A 		46.3
(-2.4)
A 		34.2
(-3)
A 		116
B 155.7
(3)
A 		90.1
(0)
A 		74
(-0.7)
A 		23
(-3)
A 		23.3
(-3)
A 		26.3
(-2.9)
A 		133
C 116.4
(3)
A 		95.9
(1.2)
A 		88.4
(0.6)
A 		70.8
(-1)
A 		70.9
(-1)
A 		47.4
(-3)
A 		69
avr 140.7
(3) 		86.7
(-0.1) 		72.7
(-0.9) 		50.7
(-2.2) 		46.8
(-2.4) 		36
(-3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 53.9
(3)
A 		11.8
(-2.3)
A 		23.8
(-0.8)
A 		6.2
(-3)
A 		48
B 50.2
(3)
P 		18.1
(-2.8)
A 		20.9
(-2.3)
A 		17
(-3)
A 		33
C 42.7
(3)
P 		13.9
(-2.3)
A 		27.5
(0.2)
A 		10.4
(-3)
A 		32
avr 48.9
(3) 		14.6
(-2.5) 		24.1
(-0.9) 		11.2
(-3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 27.6
(3)
A 		26.3
(2.6)
A 		12.1
(-1.8)
A 		14.8
(-1)
A 		14
(-1.2)
A 		8.3
(-3)
A 		19
B 54.2
(3)
A 		30
(-0)
A 		18
(-1.5)
A 		6.1
(-3)
A 		9.5
(-2.6)
A 		9.8
(-2.5)
A 		48
C 43.1
(3)
A 		29.3
(0.1)
A 		22.5
(-1.3)
A 		14.2
(-3)
A 		22.9
(-1.2)
A 		15.9
(-2.6)
A 		29
avr 41.6
(3) 		28.5
(0.4) 		17.5
(-1.8) 		11.7
(-2.9) 		15.5
(-2.2) 		11.3
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9653
Sequence Type Exemplar sequence
Representative Public ID Y7A9A.1 NCBI
Target Description Y7A9A.1 /REP_DB=WormBase Gene ID /WP=CE28151 /TR=O18256 /GB=CAB16541.2 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation /DEF=gamma-glutamyltranspeptidase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070517(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070517 NCBI Caenorhabditis elegans Y7A9A.1 (gamma-glutamyltranspeptidase) mRNA, complete cds. 11/11 None
GENEFINDER00000003828 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16197043:16201251:1 11/11 None
Y7A9A.1 ENSEMBL cdna:known chromosome:CEL140:IV:16197009:16201378:1 gene:Y7A9A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16197299-16201257(+) 100.0 100.0
Public Domain and Genome References
Gene Title gamma-glutamyltranspeptidase
Ensembl Y7A9A.1
Entrez Gene 178453 Entrez gene
SwissProt O18256 EMBL-EBI
WormBase CE28151 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3840 gamma-glutamyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16541 Hypothetical protein Y7A9A.1 [Caenorhabditis elegans] ref|NP_502918.1| Y7A9A.1 [Caenorhabditis elegans] 0.0
blast CAE68034 Hypothetical protein CBG13651 [Caenorhabditis briggsae] 0.0
blast CAE68167 Hypothetical protein CBG13826 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000101 EMBL-EBI Peptidase T3, gamma-glutamyltranspeptidase 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502918.1 1 26-48
Y7A9A.1 1 26-48
GENEFINDER00000003828 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:191598_AT
tcatactatgtgacgtcaggccctgcgattatggatagtgggacttcgcagataagtgtg
gtggatgatgatggaaatgcagttagcttgacttcaacaattaatactgcatttggctca
aaaatgctctcaaaatacggtttcatctataacaatcaaatggatgatttctcgacaccc
ggttttcaaaatcattggggttttgagccaactgcagcaaattacatccaaccgggacgc
cgaccaatgagcagtatgagcccaactatagtatttgatgtgagcagtggaaatgtgaaa
atggtgactggtggaactggaggatcgaaaattatttcggcggttgcacagactctgatt
agaggactacttatggggcagagtgctgcggaaattgtggaaatgccgagagtacacaat
cagctaacaccatatgaaacagaagtggagaatgacttttctgagaaaatcctcgaacaa
ctggaacgggatcacgacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATACTATGTGACGTCAGGCCCTG 159 621 1159 Antisense
TCAGGCCCTGCGATTATGGATAGTG 412 621 1174 Antisense
GAAATGCAGTTAGCTTGACTTCAAC 409 361 1232 Antisense
TCTCGACACCCGGTTTTCAAAATCA 690 605 1328 Antisense
GGGGTTTTGAGCCAACTGCAGCAAA 539 497 1355 Antisense
GCAGCAAATTACATCCAACCGGGAC 326 313 1372 Antisense
GCCGACCAATGAGCAGTATGAGCCC 402 283 1397 Antisense
TTATTTCGGCGGTTGCACAGACTCT 566 673 1490 Antisense
GACTACTTATGGGGCAGAGTGCTGC 510 373 1523 Antisense
GAGAGTACACAATCAGCTAACACCA 557 395 1566 Antisense
GAACAACTGGAACGGGATCACGACC 40 353 1633 Antisense
Sequence Source Affymetrix Proprietary Database