[Home] | [Total List]

[191597_at] ankyrin and protein kinase

Description K12C11.4 /REP_DB=WormBase Gene ID /WP=CE18058 /TR=O44997 /GB=AAK18971.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin and protein kinase
Cluster 6grp_total > 08      4grp_total > 20      6grp_cgc > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 83.6
(3)
A 		25.2
(-3)
A 		48.4
(-0.6)
A 		71.8
(1.8)
A 		58
B 21.8
(-3)
A 		66.4
(-0.5)
A 		28.6
(-2.6)
A 		129
(3)
A 		107
C 89.8
(0.1)
A 		131.3
(2.7)
A 		41.9
(-3)
A 		135.8
(3)
A 		94
avr 65.1
(-0.9) 		74.3
(-0.1) 		39.6
(-3) 		112.2
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 20.3
(-2.1)
A 		13.3
(-2.8)
A 		75
(3)
A 		52.8
(0.9)
A 		10.7
(-3)
A 		16.8
(-2.4)
A 		64
B 99.8
(3)
A 		13.6
(-2.6)
A 		14
(-2.5)
A 		6.9
(-3)
A 		16.8
(-2.4)
A 		12.3
(-2.7)
A 		93
C 77.9
(3)
A 		16.3
(-2.2)
A 		14.7
(-2.3)
A 		18.3
(-2)
A 		53.6
(1)
A 		6.4
(-3)
A 		72
avr 66
(3) 		14.4
(-2.7) 		34.6
(-0.5) 		26
(-1.4) 		27
(-1.3) 		11.8
(-3) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 30.4
(3)
A 		5.5
(-3)
A 		12.7
(-1.3)
A 		10.5
(-1.8)
A 		25
B 7
(-2.9)
A 		16.4
(-0.2)
A 		6.6
(-3)
A 		27.5
(3)
A 		21
C 29.7
(0.9)
A 		37.7
(3)
A 		14.6
(-3)
A 		22.9
(-0.8)
A 		23
avr 22.4
(3) 		19.9
(1.6) 		11.3
(-3) 		20.3
(1.9) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 3.7
(-2.8)
A 		4.7
(-2.3)
A 		16.3
(3)
A 		13.4
(1.7)
A 		3.2
(-3)
A 		4.1
(-2.6)
A 		13
B 34.7
(3)
A 		4.5
(-2.5)
A 		3.4
(-2.7)
A 		1.8
(-3)
A 		6.8
(-2.1)
A 		4.6
(-2.5)
A 		33
C 28.9
(3)
A 		5
(-2.4)
A 		3.7
(-2.6)
A 		3.7
(-2.6)
A 		17.3
(0.4)
A 		2.1
(-3)
A 		27
avr 22.4
(3) 		4.7
(-2.6) 		7.8
(-1.7) 		6.3
(-2.1) 		9.1
(-1.2) 		3.6
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21
Sequence Type Exemplar sequence
Representative Public ID K12C11.4 NCBI
Target Description K12C11.4 /REP_DB=WormBase Gene ID /WP=CE18058 /TR=O44997 /GB=AAK18971.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ankyrin and protein kinase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058439(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058439 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-119) (tag-119) mRNA, complete cds. 11/11 None
SNAP00000016379 ENSEMBL cdna:SNAP chromosome:CEL140:I:1313991:1328152:1 11/11 None
GENEFINDER00000016392 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:1315350:1328152:1 10/11 None
K12C11.4 ENSEMBL cdna:known chromosome:CEL140:I:1305583:1328152:1 gene:K12C11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:1305582-1328152(+) 100.0 100.0
Public Domain and Genome References
Gene Title ankyrin and protein kinase
Gene Symbol tag-119
Ensembl K12C11.4
Entrez Gene 187322 Entrez gene
SwissProt O44997 EMBL-EBI
WormBase CE18058 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1586311_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
CANINE_2:CFA.5085.1.A1_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
CANINE_2:CFAAFFX.2868.1.S1_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
CANINE_2:CFAAFFX.2872.1.S1_S_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
CANINE_2:CFAAFFX.2873.1.S1_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
CANINE_2:CFAAFFX.2873.1.S1_S_AT similar to Death-associated protein kinase 1 (DAP kinase 1) cfa
HG-U133A:211214_S_AT death-associated protein kinase 1 hs
HG-U133_PLUS_2:211214_S_AT death-associated protein kinase 1 hs
HG-U133A_2:211214_S_AT death-associated protein kinase 1 hs
HG-U133A:203139_AT death-associated protein kinase 1 hs
HG-U133_PLUS_2:203139_AT death-associated protein kinase 1 hs
HG-FOCUS:203139_AT death-associated protein kinase 1 hs
HG-U133A_2:203139_AT death-associated protein kinase 1 hs
HG-U95AV2:40049_AT death-associated protein kinase 1 hs
HU35KSUBD:RC_AA479943_AT death-associated protein kinase 1 hs
HUGENEFL:X76104_AT death-associated protein kinase 1 hs
U133_X3P:G4826683_3P_AT death-associated protein kinase 1 hs
U133_X3P:G13177655_3P_A_AT death-associated protein kinase 1 hs
HG-U95B:48214_AT death-associated protein kinase 1 hs
HU35KSUBB:RC_R33616_AT Death-associated protein kinase 1 hs
HG-U133_PLUS_2:237409_AT Death-associated protein kinase 1 hs
HG-U133B:237409_AT Death-associated protein kinase 1 hs
HG-U133_PLUS_2:239162_AT Death-associated protein kinase 1 hs
HG-U133B:239162_AT Death-associated protein kinase 1 hs
HG-U95B:51580_AT Death-associated protein kinase 1 hs
HG-U95C:62314_AT Death-associated protein kinase 1 hs
HG-U95E:67600_AT Death-associated protein kinase 1 hs
HG-U95E:78892_R_AT Death-associated protein kinase 1 hs
HU35KSUBB:RC_N34470_AT Death-associated protein kinase 1 hs
HU35KSUBB:RC_T91863_AT Death-associated protein kinase 1 hs
U133_X3P:HS.15682.0.A1_3P_AT Death-associated protein kinase 1 hs
U133_X3P:HS.16954.0.S1_3P_AT Death-associated protein kinase 1 hs
MOUSE430_2:1426915_AT death associated protein kinase 1 mm
MOE430A:1426915_AT death associated protein kinase 1 mm
MOUSE430A_2:1426915_AT death associated protein kinase 1 mm
MOE430A:1427358_A_AT death associated protein kinase 1 mm
MOUSE430_2:1427358_A_AT death associated protein kinase 1 mm
MOUSE430A_2:1427358_A_AT death associated protein kinase 1 mm
MG-U74BV2:114505_AT death associated protein kinase 1 mm
MG-U74BV2:114748_AT death associated protein kinase 1 mm
MG-U74CV2:168402_R_AT death associated protein kinase 1 mm
MG-U74CV2:166620_AT death associated protein kinase 1 mm
MG-U74CV2:137659_AT Death associated protein kinase 1 (Dapk1), mRNA mm
MOE430B:1445032_AT Death associated protein kinase 1 (Dapk1), mRNA mm
MOUSE430_2:1445032_AT Death associated protein kinase 1 (Dapk1), mRNA mm
MU19KSUBC:TC38904_AT Death associated protein kinase 1 (Dapk1), mRNA mm
RG-U34C:RC_AA818353_AT death associated protein kinase 1 (predicted) rn
RG-U34C:RC_AA858997_AT death associated protein kinase 1 (predicted) rn
RAE230A:1376788_AT death associated protein kinase 1 (predicted) rn
RAT230_2:1376788_AT death associated protein kinase 1 (predicted) rn
RAE230B:1379911_AT death associated protein kinase 1 (predicted) rn
RAT230_2:1379911_AT death associated protein kinase 1 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
7165 signal transduction inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18971 Temporarily assigned gene name protein 119 [Caenorhabditis elegans] ref|NP_490840.1| Temporarily Assigned Gene name family member (tag-119) [Caenorhabditis elegans] 0.0
blast AAW57534 death-associated protein kinase [Caenorhabditis elegans] 0.0
blast CAE63929 Hypothetical protein CBG08506 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 2.0E-63
hanks 2.1.17 CaMK Group; CaMK I Regulated by Ca2+/CaM and close relatives; TWITCH 7.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR000488 EMBL-EBI Death domain 9.7E-24
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-7
Pfam IPR002110 EMBL-EBI Ankyrin 0.0040
Pfam IPR002110 EMBL-EBI Ankyrin 4.6E-6
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 9.1E-9
Pfam IPR000719 EMBL-EBI Protein kinase 5.1E-78
Pfam IPR000488 EMBL-EBI Death domain 9.7E-24
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 9.1E-9
Pfam IPR000488 EMBL-EBI Death domain 1.8E-5
Pfam IPR000488 EMBL-EBI Death domain 4.2E-12
Pfam IPR002110 EMBL-EBI Ankyrin 1.3E-7
Pfam IPR002110 EMBL-EBI Ankyrin 3.1E-8
Pfam IPR002110 EMBL-EBI Ankyrin 4.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 9.1E-9
Sequence
Target Sequence 
>C. ELEGANS:191597_AT
tggagcgacatttcatctcaccgaagcatctgaaagaacatcgtgagcatccagcactgt
tcccaccggaatccatgatggagatgcagcaacgagaatcgttatcagtgaaggggaccc
aagacgaggaggagttgttcacggatgttgtatgcttcggatcacgggatgtcgcccgac
acctcacacttggtatagacgtgggtgttgctgatcttcagatggcgagtcggtgtgagc
tagcgtgtcttctcgatccacctcatgcaatgggaagagactggtcgattctggcggtca
agcttcagttgactgatcaagtgccagatgtcgattcaaccggtcaatccctatcccgta
ccgatcaattgctcaacgagtgggccatccaccatccggagcaagccagcgtcggtaacc
tgtgcagaattctcgtggaactcgggcggtgcgatgcgcgagacgcgctctaccgcacag
tcccactgtacgtgttcgcgccgctcgaagatcaattcctgttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGCGACATTTCATCTCACCGAA 201 549 3728 Antisense
ACATCGTGAGCATCCAGCACTGTTC 193 107 3765 Antisense
GTTCCCACCGGAATCCATGATGGAG 61 443 3786 Antisense
TCGGATCACGGGATGTCGCCCGACA 706 603 3884 Antisense
CCCGACACCTCACACTTGGTATAGA 653 259 3902 Antisense
GCGAGTCGGTGTGAGCTAGCGTGTC 4 291 3952 Antisense
TCTCGATCCACCTCATGCAATGGGA 606 611 3978 Antisense
GTGCCAGATGTCGATTCAACCGGTC 117 479 4048 Antisense
TATCCCGTACCGATCAATTGCTCAA 364 657 4079 Antisense
ATCCGGAGCAAGCCAGCGTCGGTAA 240 27 4121 Antisense
GCCGCTCGAAGATCAATTCCTGTTG 606 285 4227 Antisense
Sequence Source Affymetrix Proprietary Database