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[191596_s_at] ser/thr protein phosphatase

Description W03D8.2 /REP_DB=WormBase Gene ID /WP=CE18322 /TR=O45001 /GB=AAK21497.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr protein phosphatase
Cluster 6grp_total > 69      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 81.6
(-0.1)
A 		49.2
(-3)
A 		73.5
(-0.8)
A 		116.8
(3)
A 		68
B 98.1
(2.7)
A 		29.5
(-2)
A 		15.2
(-3)
A 		102
(3)
A 		87
C 89.6
(0.4)
A 		35.7
(-2.7)
A 		31.3
(-3)
A 		134.6
(3)
A 		103
avr 89.8
(0.9) 		38.1
(-3) 		40
(-2.9) 		117.8
(3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 86.3
(0.7)
A 		31.2
(-2.5)
A 		52.3
(-1.3)
A 		22.3
(-3)
A 		73.6
(-0.1)
A 		127.1
(3)
P 		105
B 67
(1.4)
A 		4.1
(-3)
A 		6.7
(-2.8)
A 		52.2
(0.4)
A 		51.1
(0.3)
A 		89.1
(3)
P 		85
C 57.6
(-0.2)
A 		10.1
(-2.8)
A 		58.2
(-0.2)
A 		6.7
(-3)
A 		54.7
(-0.4)
A 		117.2
(3)
P 		111
avr 70.3
(0.5) 		15.1
(-3) 		39.1
(-1.5) 		27.1
(-2.3) 		59.8
(-0.2) 		111.1
(3) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 29.7
(3)
A 		10.7
(-3)
A 		19.2
(-0.3)
A 		17.1
(-1)
A 		19
B 31.3
(3)
A 		7.3
(-2.2)
A 		3.5
(-3)
A 		21.7
(0.9)
A 		28
C 29.7
(3)
A 		10.3
(-3)
A 		10.9
(-2.8)
A 		22.7
(0.8)
A 		19
avr 30.2
(3) 		9.4
(-3) 		11.2
(-2.5) 		20.5
(0.2) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 15.9
(-0.6)
A 		11.1
(-1.7)
A 		11.4
(-1.6)
A 		5.7
(-3)
A 		22.2
(0.9)
A 		30.9
(3)
P 		25
B 23.3
(1.1)
A 		1.4
(-3)
A 		1.6
(-3)
A 		13.8
(-0.7)
A 		20.8
(0.7)
A 		33.2
(3)
P 		32
C 21.3
(0.2)
A 		3.1
(-2.7)
A 		14.8
(-0.9)
A 		1.3
(-3)
A 		17.7
(-0.4)
A 		39.2
(3)
P 		38
avr 20.2
(0.1) 		5.2
(-3) 		9.3
(-2.2) 		6.9
(-2.7) 		20.2
(0.1) 		34.4
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 191596_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.184
Sequence Type Exemplar sequence
Representative Public ID W03D8.2 NCBI
Target Description W03D8.2 /REP_DB=WormBase Gene ID /WP=CE18322 /TR=O45001 /GB=AAK21497.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation /DEF=ser-thr protein phosphatase
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058648(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058648 NCBI Caenorhabditis elegans W03D8.2 (W03D8.2) mRNA, complete cds. 11/11 None
SNAP00000016958 ENSEMBL cdna:SNAP chromosome:CEL140:I:2798214:2800592:-1 11/11 None
GENEFINDER00000016970 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2798214:2800096:-1 11/11 None
W03D8.2 ENSEMBL cdna:known chromosome:CEL140:I:2798214:2799845:-1 gene:W03D8.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015213 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2798213-2799845(-) 98.81 100.0
Public Domain and Genome References
Gene Title ser/thr protein phosphatase
Ensembl W03D8.2
Entrez Gene 171844 Entrez gene
SwissProt O45001 EMBL-EBI
WormBase CE18322 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16787 hydrolase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491049 W03D8.2 [Caenorhabditis elegans] gb|AAK21497.1| Hypothetical protein W03D8.2 [Caenorhabditis elegans] 0.0
blast CAE69172 Hypothetical protein CBG15204 [Caenorhabditis briggsae] 1.0E-169
blast CAE69172 Hypothetical protein CBG15204 [Caenorhabditis briggsae] 1.0E-168
blast CAE69172 Hypothetical protein CBG15204 [Caenorhabditis briggsae] 1.0E-167
blast NP_908906 putative serine/threonine protein phosphatase [Oryza sativa (japonica cultivar-group)] dbj|BAB93408.1| putative protein phosphatase PP1 [Oryza sativa (japonica cultivar-group)] 2.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.3E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.3E-37
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 2.3E-37
Sequence
Target Sequence 
>C. ELEGANS:191596_S_AT
gttggcggcggttattggagggaaggtgttctgtgcacatggtggaatttcgccttggct
ggaaagtttggaggatattaattcgatcgagcgtcccttggtggtcccaccgtacggcct
agcgtgcgatcttctctggtcggacccggctcagccggaacgcaacggctggggcctcag
tcaccgtggaatttcattcacttatggcaaaagtgttgtcgaagagttttgtgcgaaaaa
tgacattgctctggtgattcggggacatcaactgtttaaggagatgtacccgcaaggatg
tgtgcttcgtttcggcggtcgcctgatctccctgttctccgcactgaactacgaaggaca
caagaacaatagctccgtgctcaagcttgaattcgtcggacagcgtgtgaaggttaagca
ggttctgtacagatgccgacactacgcaccgctccgttctaatgagtactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGCGGCGGTTATTGGAGGGAAG 699 431 558 Antisense
GAAGGTGTTCTGTGCACATGGTGGA 324 335 579 Antisense
TGGTGGAATTTCGCCTTGGCTGGAA 400 551 597 Antisense
GCCTCAGTCACCGTGGAATTTCATT 2 283 731 Antisense
ACATTGCTCTGGTGATTCGGGGACA 271 105 800 Antisense
GCAAGGATGTGTGCTTCGTTTCGGC 386 321 849 Antisense
CTGTTCTCCGCACTGAACTACGAAG 599 239 889 Antisense
GAACAATAGCTCCGTGCTCAAGCTT 104 353 921 Antisense
GCTCAAGCTTGAATTCGTCGGACAG 55 301 936 Antisense
GGTTCTGTACAGATGCCGACACTAC 260 507 978 Antisense
CACCGCTCCGTTCTAATGAGTACTT 669 199 1004 Antisense
Sequence Source Affymetrix Proprietary Database