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[191595_at] 7TM chemoreceptor, str family

Description C17E7.11 /REP_DB=WormBase Gene ID /WP=CE25781 /GEN=str-229 /TR=O16396 /GB=AAC24279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster 6grp_total > 20      4grp_total > 20      6grp_cgc > 73      6grp_cgc_sub > 02_03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 30
(-0.7)
A 		38.5
(-0)
A 		2.7
(-3)
A 		75.3
(3)
A 		73
B 37.4
(1.8)
A 		38.4
(2)
A 		10.8
(-3)
A 		44
(3)
A 		33
C 32.6
(-1.5)
A 		40.3
(-1)
A 		6.4
(-3)
A 		110.1
(3)
P 		104
avr 33.3
(-0.7) 		39.1
(-0.2) 		6.6
(-3) 		76.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 8.1
(-2.9)
A 		17.4
(1.1)
A 		21.9
(3)
A 		14.8
(-0)
A 		7.8
(-3)
A 		15.5
(0.3)
A 		14
B 7.4
(-3)
A 		23.2
(-1.1)
A 		41.5
(1.1)
A 		57.5
(3)
A 		23.2
(-1.1)
A 		13.7
(-2.2)
A 		50
C 24.7
(-0.5)
A 		49.4
(3)
A 		32.9
(0.6)
A 		7.6
(-3)
A 		18.4
(-1.4)
A 		34.3
(0.8)
A 		42
avr 13.4
(-3) 		30
(2.3) 		32.1
(3) 		26.6
(1.2) 		16.5
(-2) 		21.2
(-0.5) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 10.9
(2.9)
A 		8.4
(1.5)
A 		0.7
(-3)
A 		11
(3)
A 		10
B 11.9
(3)
A 		9.5
(1.5)
A 		2.5
(-3)
A 		9.4
(1.4)
A 		9
C 10.8
(0.1)
A 		11.6
(0.4)
A 		2.2
(-3)
A 		18.6
(3)
P 		16
avr 11.2
(2) 		9.8
(1.3) 		1.8
(-3) 		13
(3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1.5
(-3)
A 		6.2
(3)
A 		4.8
(1.2)
A 		3.8
(-0.1)
A 		2.4
(-1.9)
A 		3.8
(-0.1)
A 		5
B 2.6
(-3)
A 		7.7
(-0.6)
A 		10.1
(0.6)
A 		15.2
(3)
A 		9.4
(0.2)
A 		5.1
(-1.8)
A 		13
C 9.2
(0.4)
A 		15.1
(3)
A 		8.4
(0)
A 		1.5
(-3)
A 		6
(-1)
A 		11.5
(1.4)
A 		14
avr 4.4
(-3) 		9.7
(3) 		7.8
(0.8) 		6.8
(-0.3) 		5.9
(-1.3) 		6.8
(-0.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 191595_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15468
Sequence Type Exemplar sequence
Representative Public ID C17E7.11 NCBI
Target Description C17E7.11 /REP_DB=WormBase Gene ID /WP=CE25781 /GEN=str-229 /TR=O16396 /GB=AAC24279.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation /DEF=chemoreceptor
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071677(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071677 NCBI Caenorhabditis elegans Seven TM Receptor family member (str-229) (str-229) mRNA, complete cds. 11/11 None
GENEFINDER00000014096 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3897929:3902060:-1 11/11 None
C17E7.11 ENSEMBL cdna:known chromosome:CEL140:V:3900388:3902371:-1 gene:C17E7.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000014093 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3900387-3902371(-) 99.9 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, str family
Gene Symbol str-229
Ensembl C17E7.11
Entrez Gene 192039 Entrez gene
SwissProt O16396 EMBL-EBI
WormBase CE25781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC24279 Seven tm receptor protein 229 [Caenorhabditis elegans] ref|NP_504078.1| Seven TM Receptor family member (str-229) [Caenorhabditis elegans] 0.0
blast AAC24278 Hypothetical protein C17E7.10 [Caenorhabditis elegans] ref|NP_504077.2| C17E7.10 [Caenorhabditis elegans] 0.0
blast AAC24279 Seven tm receptor protein 229 [Caenorhabditis elegans] ref|NP_504078.1| Seven TM Receptor family member (str-229) [Caenorhabditis elegans] 1.0E-154
blast CAB60543 Hypothetical protein Y73F8A.18 [Caenorhabditis elegans] ref|NP_502853.1| Y73F8A.18 [Caenorhabditis elegans] 1.0E-101
blast CAB00876 Hypothetical protein T16A9.2 [Caenorhabditis elegans] ref|NP_506518.1| Seven TM Receptor family member (str-230) [Caenorhabditis elegans] 6.0E-69
blast CAE75003 Hypothetical protein CBG22904 [Caenorhabditis briggsae] 1.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.2E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-5
Pfam IPR003002 EMBL-EBI 7TM chemoreceptor, subfamily 1 6.5E-5
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 5.5E-6
Pfam IPR000494 EMBL-EBI Epidermal growth-factor receptor (EGFR), L domain 1.6E-23
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504078.1 7 10-32,39-58,92-114,127-149,200-222,252-274,284-306
C17E7.11 7 10-32,39-58,92-114,127-149,200-222,252-274,284-306
GENEFINDER00000014096 4 28-50,63-85,136-158,186-208
Sequence
Target Sequence 
>C. ELEGANS:191595_AT
catcccgccgtttttcggcatatgtttttcatccgtcatttatttttgcctcggctcaac
tgattcattgaaagctgtggttttaacgaaaattagaaaattcgagaaattcaaaagtga
tgatatgagtttttatggtttcactctatacactgcaatagacaactggtcgccagtaaa
ctggagaagtattatcggaaatatattaatagttatgttaatactcatcgcgtttttcat
aatgatcaaatatggtatgaaaacatactgggaaatcagaaaacttagcgatgtggcagt
caacacatcagaattatcaaaatcacttcaatatcagctgttcatatcactcgttgtgca
agcaatcatcccggttttgctgattttcgttccagcaacatttacagttcttgctctgct
tggcaaaggtcgtgaattccatggacatatcatttcagcttcgatagcattgtttcctgc
tattgatcctctcccagtggtgattat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCCCGCCGTTTTTCGGCATATGT 503 209 420 Antisense
TTCATCCGTCATTTATTTTTGCCTC 464 687 447 Antisense
TTTTTGCCTCGGCTCAACTGATTCA 500 673 462 Antisense
ATGGTTTCACTCTATACACTGCAAT 316 51 554 Antisense
GTTAATACTCATCGCGTTTTTCATA 533 445 636 Antisense
ATCAGCTGTTCATATCACTCGTTGT 404 29 752 Antisense
GTGCAAGCAATCATCCCGGTTTTGC 486 479 775 Antisense
GATTTTCGTTCCAGCAACATTTACA 208 429 801 Antisense
ATTTACAGTTCTTGCTCTGCTTGGC 686 13 819 Antisense
GCATTGTTTCCTGCTATTGATCCTC 491 307 886 Antisense
TTGATCCTCTCCCAGTGGTGATTAT 346 705 902 Antisense
Sequence Source Affymetrix Proprietary Database